Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01- 21] 2,992 sequences; 32,128,072 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2512 102 7e-17 seq2247 95.1 1e-14 seq2870 93.3 4e-14 seq305 86.0 6e-12 >seq2512 Length=16788 Score = 102 bits (112), Expect = 7e-17 Identities = 223/330 (68%), Gaps = 13/330 (4%) Strand=Plus/Plus Query 22553 GCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTC 22612 || |||||||||||||| | || |||||||| | | ||||||| | || || | Sbjct 5901 GCAGTCGGCATCGGCGCGACGAGCAGCGAGTTGCGGAGACCGTGCTGGGCGATCTTGTCC 5960 Query 22613 TTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGC 22672 |||||| | ||||||||| || |||||||| || || | ||||||| ||||| || Sbjct 5961 TTGAGCGAGGCCCAGTCCCAAAGGTCGGACGGGGTTAC---GCCCCACATGTCGTACTGG 6017 Query 22673 AACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCA 22732 | ||||| ||||| || ||| ||||| | ||||| || | | || Sbjct 6018 AGAACGCCCTTGCTCGCGGGCGAGCCCTCGTAGGACGAGTACGTGCCCTCGACGATAGCG 6077 Query 22733 AGTTCG-CAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA 22791 || ||| ||| |||||| | |||| ||| || || ||||||||||| | |||||| | Sbjct 6078 AGCTCGACAG-ACGCCTCGAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG 6136 Query 22792 TTCGGCGGC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCA 22847 | ||| ||||||| | | || ||||| ||| ||||| ||| |||| Sbjct 6137 CTGCTTGGCTTCGGGCGACG----AGAAGGGGTAGCGCATGATCTGGAACGTGTCGGCCA 6192 Query 22848 TACCCTGAACGCCTATACCGATCGGTCGGT 22877 ||||| ||||| | |||||||| |||| Sbjct 6193 GGCCCTGCACGCCGAGGCCGATCGGGCGGT 6222 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || || ||||| ||||||| || || || ||||| || |||||||| || || || || Sbjct 6885 TTCTCGACGCGCTTCATAAAGAGGTCGGGCATCCAGAGCGCGTAGAAGAGGTCACGCGCA 6944 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 || |||||||| |||||| |||||| || || | || || || |||||||| ||| Sbjct 6945 CGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGACGTCCGCGTGC 7004 Query 23459 CACGGCTCGAGGTAAACGGC 23478 |||||||||| ||| || || Sbjct 7005 CACGGCTCGATGTAGACTGC 7024 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || ||| ||| || || ||||||||||| || || ||||||||||||||| Sbjct 7292 CCGATACCACCGGCCGTCTTGGAGATCATCGCGCACGTCTTGAGCGTGTCGTAGATGCCC 7351 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 |||||||||||||| || ||| ||| | ||| || || |||| |||| | ||||| Sbjct 7352 TCGATGCTGTCCTCCTTCATCGTGACGAGGAAGCAAGACGACAGCTGCGGGTGAGGCGTG 7411 Query 23744 GCGGC 23748 |||| Sbjct 7412 CCGGC 7416 >seq2247 Length=21484 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| ||||| || || ||||||||| |||| || || | ||||||| || Sbjct 11454 TTCGTCAAGACCCTGACGGGTAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATC 11513 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || ||||||||| ||| | || || ||||||||||| || Sbjct 11514 GACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 11573 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGAC 31348 || ||||||||||| ||| | || ||| Sbjct 11574 ATCTTCGCTGGCAAGCAGCTCGAGGAC 11600 >seq2870 Length=12576 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 31209 AGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGG 31268 |||| || || |||||||| ||||| |||| ||||| | || |||| |||| | | Sbjct 9771 AGACCCTCACCGGCAAAACCATCACGCTCGAGGTTGAGTCCTCGGACACGATCGACAACG 9712 Query 31269 TCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCG 31328 |||| | || ||||||||| ||| | || |||||||||||||| | || |||| Sbjct 9711 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCG 9652 Query 31329 CTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGA 31388 ||||||| ||| | || ||| ||| | || || ||||| || |||||||||| Sbjct 9651 CTGGCAAGCAGCTTGAGGACGGCCGGACCCTCTCGGACTACAACATCCAGAAAGAATCGA 9592 Query 31389 CTCTTCATCTGGTACT 31404 | || || || || || Sbjct 9591 CGCTCCACCTCGTCCT 9576 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31209 AGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGG 31268 |||| || |||||||| || ||||| |||| || || | || |||| |||| | | Sbjct 10061 AGACCCTCACAGGCAAGACCATCACGCTCGAGGTCGAGTCCTCGGACACGATCGACAACG 10002 Query 31269 TCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCG 31328 |||| | || ||||||||| ||| | ||||| ||||||||||| | || |||| Sbjct 10001 TCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCTTGATCTTCG 9942 Query 31329 CTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGA 31388 ||||||| ||| | || ||| ||| | || || |||||||| || || |||| Sbjct 9941 CTGGCAAGCAGCTTGAGGACGGCCGGACCCTCTCGGACTACAACATTCAGAAGGAGTCGA 9882 Query 31389 CTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || ||||| || || | ||| | || |||| Sbjct 9881 CGCTCCATCTCGTCCTCCGTCTGCGTGGTGGTA 9849 >seq305 Length=9259 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31209 AGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGG 31268 |||| || || ||||| |||||||| |||| || || | || |||| |||| | | Sbjct 8078 AGACCCTCACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGACACGATCGACAACG 8019 Query 31269 TCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCG 31328 |||| | || |||||||||||| | ||||||||||||||||| || || |||| Sbjct 8018 TCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCGCCCGACCAGCAGCGCCTCATCTTCG 7959 Query 31329 CTGGCAAACAGTTGGAAGAC 31348 ||||||| ||| | || ||| Sbjct 7958 CTGGCAAGCAGCTCGAGGAC 7939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445749728336640