Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01- 21] 2,992 sequences; 32,128,072 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1668 129 9e-26 seq49 125 1e-24 seq2520 116 6e-22 seq1621 116 6e-22 seq2066 113 7e-21 >seq1668 Length=24064 Score = 129 bits (142), Expect = 9e-26 Identities = 125/158 (79%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| |||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 2288 GCCAAGCGCCACCGCAAGATC-CTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 2346 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||| ||| ||||||| | | || || |||| Sbjct 2347 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAACGTATCTCTGGCCTCATTTACGAGGAGAC 2406 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 |||| || ||||| ||||||| ||| ||| |||| Sbjct 2407 CCGTGGCGTCCTGAAGGTCTTCCTTGAGAACGTCATCC 2444 >seq49 Length=11144 Score = 125 bits (138), Expect = 1e-24 Identities = 124/158 (78%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| |||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 9955 GCCAAGCGCCACCGCAAGATC-CTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 9897 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| |||| || | |||| || |||| Sbjct 9896 CCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 9837 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 ||| | || ||||| | ||||| ||| ||| |||| Sbjct 9836 TCGCGGCGTCCTGAAGGTTTTCCTTGAGAACGTGATCC 9799 >seq2520 Length=16660 Score = 116 bits (128), Expect = 6e-22 Identities = 122/158 (77%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| |||| ||||| || ||||||||||| ||||||||||| || || Sbjct 6183 GCCAAGCGCCACCGCAAGATC-CTTCGCGACAACATCCAAGGCATCACCAAGCCCGCCAT 6125 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| |||||||| ||||||||| ||||||| | |||| || |||| Sbjct 6124 CCGCCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGGCCTCATCTACGAGGAGAC 6065 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | || | ||| ||||| | | | ||| |||| Sbjct 6064 GCGCGGCGTCCTTAAGGTCTTCTTGGAAAACGTCATCC 6027 >seq1621 Length=3316 Score = 116 bits (128), Expect = 6e-22 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 1209 GCCAAGCGCCACCGCAAGAT-TCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 1267 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| |||||||| ||||||||| |||| || | |||| || |||| Sbjct 1268 CCGCCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 1327 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587 || | || ||||| ||||| | ||| ||| || Sbjct 1328 CCGCGGCGTCCTGAAGGTCTTCTTGGAGAACGTCAT 1363 >seq2066 Length=22768 Score = 113 bits (124), Expect = 7e-21 Identities = 116/149 (78%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| |||| ||||| || |||||||| || ||||||||||| || || Sbjct 2110 GCCAAGCGTCACCGCAAGATC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 2052 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| ||||| || ||||||||| |||| || | |||| || |||| Sbjct 2051 CCGCCGTCTCGCTCGCCGTGGCGGCGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 1992 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGA 16580 || | || | ||| |||||||| ||| Sbjct 1991 GCGCGGCGTCCTCAAGGTCTTCCTCGAGA 1963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072464393456