Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01- 21] 2,992 sequences; 32,128,072 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2512 141 2e-28 seq41 96.9 7e-15 >seq2512 Length=16788 Score = 141 bits (156), Expect = 2e-28 Identities = 197/267 (74%), Gaps = 12/267 (4%) Strand=Plus/Plus Query 244297 GCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA 244356 |||||||||||| |||| || | |||||||| |||| ||||||||||| || ||| Sbjct 5999 GCCCCACATGTCGTACTGGAGAACGCCCTTGCTCGCGGGCGAGCCCTCGTAGGACGAGTA 6058 Query 244357 GGGACCGTCG-CGCTGGGCCAGCTT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTC 244414 | || ||| || | | | |||| |||| | | ||||| ||||||| |||||||||| Sbjct 6059 CGTGCCCTCGACGATAG-CGAGCTCGACAGA-CGCCTCGAGCGCGGCGTGGTAGATGGTC 6116 Query 244415 TCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGC-AGGTGAAGGGGATGCCCATCAT 244473 ||||||||| |||||| | | || | ||| || | | ||||||| || ||| || Sbjct 6117 TCGAAGATCTGCTTGTTGAGCT-GCTTGGCTTCGGGCGACGAGAAGGGGTAGCGCATGAT 6175 Query 244474 CATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 | ||| ||||||||| ||||||||||||| |||||| || | ||| ||| ||||||| Sbjct 6176 CTGGAACGTGTCGGCCAGGCCCTGCACGCCGAGGCCGATCGGGCGGTGACGCATGTTGGA 6235 Query 244534 ---GCGCATGGCTTCGGGCACGGGGTA 244557 |||| || || || |||||||| Sbjct 6236 GTTGCGC---GCCTCAGGGACGGGGTA 6259 Score = 104 bits (114), Expect = 4e-17 Identities = 96/119 (81%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 244791 CGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA 244850 ||||||| ||||||||||||||||||||||| || |||||||||| ||| ||| |||||| Sbjct 6618 CGTTGCAAGCGTCCTTGTAGAGCATGAAGGGACCACCGGTCTCGACCTGAGCGTCGAGGA 6677 Query 244851 -CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 ||| || |||||| | | |||||||| || | |||||| |||||| |||||| Sbjct 6678 TCGC-GTACCAGAGCTTCTGCGCCTTGACGGTGCGGCGAGCGCGGCCCTCCTTCTCGTA 6735 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982 |||| ||||| ||| ||||||||| ||||| || | || ||||| | ||| Sbjct 6811 CCTCAAACTCCTTGCCGTAGACCTCGTGCAGGCCAGGAGCCTCGGCAGGGCAGAAGAGCG 6870 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 ||| || || | || ||| | || ||| ||||||||||| |||||||| || | || Sbjct 6871 GCCAGTCCTCGTTCTTCTCGACGCGCTTCATAAAGAGGTCGGGCATCCAGAGCGCGTAGA 6930 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102 ||||||| | | | ||| ||| ||| |||||| | ||| || | || || | Sbjct 6931 AGAGGTCACGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCGA 6990 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCG 245137 ||||||| ||||||| ||||| |||||||| ||| Sbjct 6991 AGACGTCCGCGTGCCACGGCTCGATGTAGACTGCG 7025 >seq41 Length=11186 Score = 96.9 bits (106), Expect = 7e-15 Identities = 138/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989 |||||| |||||||||| ||| | | |||||||| | || ||||||||||| | | Sbjct 4249 ATCGAGCAGGAGTTCCTGACGGACGCTCTGCCCGTCGCGCTCATCGGCATGAACGCCAAG 4190 Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTC- 43046 ||||||||| |||||||| ||| ||||||||||| || || || ||| | || | Sbjct 4189 CTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCGTCGCC--CTCGGCAACG 4132 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 || | ||||||| | || |||||||||||| ||||||| || || || | || Sbjct 4131 AGAAG-TACTACAACTCCACGAACCCCTTCGACTTCATGGAGATGATTTCCCTGCAAGGG 4073 Query 43107 AAGACCAA 43114 |||||||| Sbjct 4072 AAGACCAA 4065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944303881713920