Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01- 21] 2,992 sequences; 32,128,072 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq305 114 3e-20 seq2870 102 2e-16 seq2247 102 2e-16 >seq305 Length=9259 Score = 114 bits (126), Expect = 3e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| || | ||| || || ||||| || ||||| | Sbjct 7868 CCACCGCGGAGACGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 7927 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| || ||||| || ||| Sbjct 7928 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 7987 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || || | || || || || Sbjct 7988 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 8047 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 ||||||||||||||||| ||||| || |||| Sbjct 8048 TCGAGCGTGATCGTCTTGCCGGTGAGGGTCT 8078 >seq2870 Length=12576 Score = 102 bits (112), Expect = 2e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || ||||| || | || ||||| || | ||| |||||| ||||| || ||||| Sbjct 9558 TGGCCGCCGCGAAGACGGAGGACGAGGTGGAGCGTCGATTCTTTCTGGATGTTGTAGTCC 9617 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| || || ||||| || | || || || |||||||||| ||||| || Sbjct 9618 GAGAGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGG 9677 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| || || || ||||| || || | || || || Sbjct 9678 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCA 9737 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 || ||||||||||| || || ||||| || |||| Sbjct 9738 ACCTCGAGCGTGATGGTTTTGCCGGTGAGGGTCT 9771 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || |||||||| | ||| || || || || || ||||| | | Sbjct 9851 CCACCACGCAGACGGAGGACGAGATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAG 9910 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || |||||||||| ||||| || | ||| Sbjct 9911 AGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGG 9970 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || || || ||||| || || | || || || || Sbjct 9971 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 10030 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 ||||||||||| ||||| || || || |||| Sbjct 10031 TCGAGCGTGATGGTCTTGCCTGTGAGGGTCT 10061 >seq2247 Length=21484 Score = 102 bits (112), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 288311 TGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTC 288370 |||| ||||| || | || || || ||||||||||| ||||| || | ||||| | Sbjct 11607 TGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGC 11548 Query 288371 CTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGA 288430 | || || |||||||| || || || ||||| || || | ||| || || || |||| Sbjct 11547 CCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGA 11488 Query 288431 GCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 | ||||||||||| || ||||| ||||||||||| Sbjct 11487 GGGTGATCGTCTTACCCGTCAGGGTCTTGACGAA 11454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179609177948576