Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01-
21] 2,992 sequences; 32,128,072 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq305 114 3e-20
seq2870 102 2e-16
seq2247 102 2e-16
>seq305
Length=9259
Score = 114 bits (126), Expect = 3e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | || ||||| || | ||| || || ||||| || ||||| |
Sbjct 7868 CCACCGCGGAGACGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 7927
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || |||||||| || ||||| || |||
Sbjct 7928 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 7987
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| || |||||||| || || || ||||| || || | || || || ||
Sbjct 7988 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 8047
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457
||||||||||||||||| ||||| || ||||
Sbjct 8048 TCGAGCGTGATCGTCTTGCCGGTGAGGGTCT 8078
>seq2870
Length=12576
Score = 102 bits (112), Expect = 2e-16
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || ||||| || | || ||||| || | ||| |||||| ||||| || |||||
Sbjct 9558 TGGCCGCCGCGAAGACGGAGGACGAGGTGGAGCGTCGATTCTTTCTGGATGTTGTAGTCC 9617
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| ||| || || ||||| || | || || || |||||||||| ||||| ||
Sbjct 9618 GAGAGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGG 9677
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || |||||||| || || || ||||| || || | || || ||
Sbjct 9678 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCA 9737
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457
|| ||||||||||| || || ||||| || ||||
Sbjct 9738 ACCTCGAGCGTGATGGTTTTGCCGGTGAGGGTCT 9771
Score = 93.3 bits (102), Expect = 1e-13
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || |||||||| | ||| || || || || || ||||| | |
Sbjct 9851 CCACCACGCAGACGGAGGACGAGATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAG 9910
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || ||||| || | || || || |||||||||| ||||| || | |||
Sbjct 9911 AGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGG 9970
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || || || ||||| || || | || || || ||
Sbjct 9971 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 10030
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457
||||||||||| ||||| || || || ||||
Sbjct 10031 TCGAGCGTGATGGTCTTGCCTGTGAGGGTCT 10061
>seq2247
Length=21484
Score = 102 bits (112), Expect = 2e-16
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 288311 TGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTC 288370
|||| ||||| || | || || || ||||||||||| ||||| || | ||||| |
Sbjct 11607 TGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGC 11548
Query 288371 CTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGA 288430
| || || |||||||| || || || ||||| || || | ||| || || || ||||
Sbjct 11547 CCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGA 11488
Query 288431 GCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
| ||||||||||| || ||||| |||||||||||
Sbjct 11487 GGGTGATCGTCTTACCCGTCAGGGTCTTGACGAA 11454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179609177948576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |