Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01-
21] 2,992 sequences; 32,128,072 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq2870 127 2e-24
seq305 120 3e-22
seq2247 102 9e-17
seq278 98.7 1e-15
seq2900 95.1 1e-14
>seq2870
Length=12576
Score = 127 bits (140), Expect = 2e-24
Identities = 163/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 46355 CTATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATA 46414
||| |||||| ||| || | | ||| | || || || | || || || |||||
Sbjct 9549 CTACATTATTGGCCGCCGCGAAGACGGAGGACGAGGTGGAGCGTCGATTCTTTCTGGATG 9608
Query 46415 TTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGC 46474
|||||||| || || || || |||| || ||||||||||| ||||| ||||||||||||
Sbjct 9609 TTGTAGTCCGAGAGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGC 9668
Query 46475 TGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC 46533
||||||| || | || |||||||||| |||||| ||||| ||| | | | ||||||
Sbjct 9669 TGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTC 9727
Query 46534 GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575
|| || || || | ||||||||||||||| || || ||
Sbjct 9728 CGAGGACTCAACCTCGAGCGTGATGGTTTTGCCGGTGAGGGT 9769
Score = 120 bits (132), Expect = 3e-22
Identities = 133/175 (76%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || |||||||| || || || || |||| || ||||||||||| |||||
Sbjct 9886 CTCCTTCTGAATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 9945
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||| | ||| | || |||||||||| ||||| ||||| |||
Sbjct 9946 GATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 10004
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575
| | | |||||| || || || || | ||||||||| ||||| || || ||
Sbjct 10005 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATGGTCTTGCCTGTGAGGGT 10059
>seq305
Length=9259
Score = 120 bits (132), Expect = 3e-22
Identities = 133/175 (76%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || ||||| |||| |||||||||||||| |||||
Sbjct 7903 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 7962
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||||||||| ||| | | ||||||||| |||||| ||||| |||
Sbjct 7963 GATGAGGCGCTGCTGGTCGGGCGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 8021
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575
| | | |||||| || || || || | |||||| || ||||| || || ||
Sbjct 8022 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTGAGGGT 8076
>seq2247
Length=21484
Score = 102 bits (112), Expect = 9e-17
Identities = 117/155 (75%), Gaps = 2/155 (1%)
Strand=Plus/Minus
Query 46431 TGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGC 46490
|||| |||| |||||||||||||| ||||| |||| |||||||||||| | || | ||
Sbjct 11607 TGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGC 11548
Query 46491 TCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCC 46549
|||||||||| |||||| ||||| ||| | | | |||||| || ||||| ||
Sbjct 11547 CCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCG 11489
Query 46550 ACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAA 46584
| ||||| || || |||||||| || || || ||
Sbjct 11488 AGGGTGATCGTCTTACCCGTCAGGGTCTTGACGAA 11454
>seq278
Length=9506
Score = 98.7 bits (108), Expect = 1e-15
Identities = 105/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 46437 CGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCT 46496
|||| || ||||||||||| ||||| ||||||||||||||||||| || | || |||||
Sbjct 9497 CGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCT 9438
Query 46497 TGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
||||| |||||| ||||| | | | |||||| || || || || | |||||
Sbjct 9437 TGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGA 9378
Query 46557 TGGTTTTGCCCGTCAGCGT 46575
|||| ||||| || || ||
Sbjct 9377 TGGTCTTGCCGGTGAGGGT 9359
>seq2900
Length=32347
Score = 95.1 bits (104), Expect = 1e-14
Identities = 110/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 46431 TGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGC 46490
|||| |||| ||||||||||||||||| || || | |||||||||||||| || | |
Sbjct 25843 TGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATAC 25902
Query 46491 TCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCC 46549
|||||||||| |||||| ||||| ||| | | | ||||| || ||||| ||
Sbjct 25903 CCTCCTTGTCCTGGATCTTTGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCG 25961
Query 46550 ACCGTGATGGTTTTGCCCGTCAGCGT 46575
| |||||||| |||||||| || ||
Sbjct 25962 AGGGTGATGGTCTTGCCCGTGAGGGT 25987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565217260083840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |