Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01- 21] 2,992 sequences; 32,128,072 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2870 127 2e-24 seq305 120 3e-22 seq2247 102 9e-17 seq278 98.7 1e-15 seq2900 95.1 1e-14 >seq2870 Length=12576 Score = 127 bits (140), Expect = 2e-24 Identities = 163/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 46355 CTATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATA 46414 ||| |||||| ||| || | | ||| | || || || | || || || ||||| Sbjct 9549 CTACATTATTGGCCGCCGCGAAGACGGAGGACGAGGTGGAGCGTCGATTCTTTCTGGATG 9608 Query 46415 TTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGC 46474 |||||||| || || || || |||| || ||||||||||| ||||| |||||||||||| Sbjct 9609 TTGTAGTCCGAGAGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGC 9668 Query 46475 TGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC 46533 ||||||| || | || |||||||||| |||||| ||||| ||| | | | |||||| Sbjct 9669 TGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTC 9727 Query 46534 GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 || || || || | ||||||||||||||| || || || Sbjct 9728 CGAGGACTCAACCTCGAGCGTGATGGTTTTGCCGGTGAGGGT 9769 Score = 120 bits (132), Expect = 3e-22 Identities = 133/175 (76%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || || || |||| || ||||||||||| ||||| Sbjct 9886 CTCCTTCTGAATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 9945 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | ||| | || |||||||||| ||||| ||||| ||| Sbjct 9946 GATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 10004 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | | | |||||| || || || || | ||||||||| ||||| || || || Sbjct 10005 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATGGTCTTGCCTGTGAGGGT 10059 >seq305 Length=9259 Score = 120 bits (132), Expect = 3e-22 Identities = 133/175 (76%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||| ||||| Sbjct 7903 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 7962 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||||| ||| | | ||||||||| |||||| ||||| ||| Sbjct 7963 GATGAGGCGCTGCTGGTCGGGCGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 8021 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 | | | |||||| || || || || | |||||| || ||||| || || || Sbjct 8022 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTGAGGGT 8076 >seq2247 Length=21484 Score = 102 bits (112), Expect = 9e-17 Identities = 117/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 46431 TGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGC 46490 |||| |||| |||||||||||||| ||||| |||| |||||||||||| | || | || Sbjct 11607 TGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGC 11548 Query 46491 TCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCC 46549 |||||||||| |||||| ||||| ||| | | | |||||| || ||||| || Sbjct 11547 CCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCG 11489 Query 46550 ACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAA 46584 | ||||| || || |||||||| || || || || Sbjct 11488 AGGGTGATCGTCTTACCCGTCAGGGTCTTGACGAA 11454 >seq278 Length=9506 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 46437 CGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCT 46496 |||| || ||||||||||| ||||| ||||||||||||||||||| || | || ||||| Sbjct 9497 CGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCT 9438 Query 46497 TGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||||| |||||| ||||| | | | |||||| || || || || | ||||| Sbjct 9437 TGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGA 9378 Query 46557 TGGTTTTGCCCGTCAGCGT 46575 |||| ||||| || || || Sbjct 9377 TGGTCTTGCCGGTGAGGGT 9359 >seq2900 Length=32347 Score = 95.1 bits (104), Expect = 1e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 46431 TGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGC 46490 |||| |||| ||||||||||||||||| || || | |||||||||||||| || | | Sbjct 25843 TGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATAC 25902 Query 46491 TCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCC 46549 |||||||||| |||||| ||||| ||| | | | ||||| || ||||| || Sbjct 25903 CCTCCTTGTCCTGGATCTTTGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCG 25961 Query 46550 ACCGTGATGGTTTTGCCCGTCAGCGT 46575 | |||||||| |||||||| || || Sbjct 25962 AGGGTGATGGTCTTGCCCGTGAGGGT 25987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565217260083840