Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01- 21] 2,992 sequences; 32,128,072 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq41 111 3e-19 seq2331 87.8 3e-12 seq2512 84.2 4e-11 >seq41 Length=11186 Score = 111 bits (122), Expect = 3e-19 Identities = 160/225 (71%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513 ||||||||| || |||||| | |||||| ||||| || || |||||| | ||| Sbjct 5036 GATCTGGAAGCCATAGAAGCAGCGGGCCTCGGCGACCTGGACCTCGCCGGAGAAGCGCTC 5095 Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573 || || ||||| ||||| || || || || || || |||||||| || || || | Sbjct 5096 GAGGAGGTTCTCGTTGACGATGCCGTCGGACGCGGCGAAGAAGGCGAGCACGTGGGAGAT 5155 Query 48574 GAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAGGTC 48630 ||| ||||||||||||| | |||| || |||| | || | ||| ||| |||||| Sbjct 5156 GAAGTGGCGCTCGTTGTCGTTGAGCTTGTTCTGCCAGTCGTGCATGTCCTTGGACAGGTC 5215 Query 48631 CACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 || || ||| | |||||||| ||||| || || |||||||| Sbjct 5216 CATCTCCTCCGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACAT 5260 >seq2331 Length=19725 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 38964 AGCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTA 39023 || ||||||| |||||| ||||||||||| || || || ||||||||| ||||| |||| Sbjct 12024 AGTTCCCACCGGTTGGCAGAGAAGAGCAGATGCACGGCCCGGTCGTCCATCTCCGCCTTA 11965 Query 39024 CTCTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGT 39064 ||| ||| |||| | ||||||||| || || | ||| || Sbjct 11964 TTCTGCAGATACGCGTCGATCATCTTCCCAATTGGAGTCGT 11924 >seq2512 Length=16788 Score = 84.2 bits (92), Expect = 4e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 213794 CCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852 ||||||| ||| | |||| ||| | || ||| || ||||| || | ||| |||||| || Sbjct 6872 CCAGTCCTCGTTCTTCTC-GACGCGCTTCATAAAGAGGTCGGGCATCCAGAGCGCGTAGA 6930 Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912 | ||||| | | | ||| ||| || ||| |||||||| || || || || | Sbjct 6931 AGAGGTCACGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCGA 6990 Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGA 213942 ||| |||||||||||||||||| ||||||| Sbjct 6991 AGACGTCCGCGTGCCACGGCTCGATGTAGA 7020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931497960673280