Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01- 21] 2,992 sequences; 32,128,072 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2870 163 4e-35 seq2247 122 1e-22 seq2676 118 1e-21 seq2900 114 2e-20 seq545 109 7e-19 >seq2870 Length=12576 Score = 163 bits (180), Expect = 4e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171880 ACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATC 171939 ||||| || || || || ||||| |||||||| ||||| || ||||| ||||| ||| || Sbjct 10059 ACCCTCACAGGCAAGACCATCACGCTCGAGGTCGAGTCCTCGGACACGATCGACAACGTC 10000 Query 171940 AAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCT 171999 || ||||||||||| || ||||| ||||| || || || ||||| || | || || ||| Sbjct 9999 AAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCTTGATCTTCGCT 9940 Query 172000 GGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACT 172059 || || |||||||| || || || |||||| | || |||||| |||| |||||||| || Sbjct 9939 GGCAAGCAGCTTGAGGACGGCCGGACCCTCTCGGACTACAACATTCAGAAGGAGTCGACG 9880 Query 172060 CTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || || || | || || |||||| Sbjct 9879 CTCCATCTCGTCCTCCGTCTGCGTGGTGGT 9850 Score = 161 bits (178), Expect = 1e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171880 ACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATC 171939 ||||| || || ||||| ||||| |||||||||||||| || ||||| ||||| ||| || Sbjct 9769 ACCCTCACCGGCAAAACCATCACGCTCGAGGTTGAGTCCTCGGACACGATCGACAACGTC 9710 Query 171940 AAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCT 171999 || |||||||| || || ||||| ||||| || ||||| ||||| || | || || ||| Sbjct 9709 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCT 9650 Query 172000 GGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACT 172059 || || |||||||| || || || |||||| | || |||||| | || || || || || Sbjct 9649 GGCAAGCAGCTTGAGGACGGCCGGACCCTCTCGGACTACAACATCCAGAAAGAATCGACG 9590 Query 172060 CTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 || ||||| || || | ||||| || || Sbjct 9589 CTCCACCTCGTCCTCCGTCTTCGCGGCGG 9561 >seq2247 Length=21484 Score = 122 bits (134), Expect = 1e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930 || || || ||||| || || || || |||||||||||||| ||||| || ||||| ||| Sbjct 11454 TTCGTCAAGACCCTGACGGGTAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATC 11513 Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990 || ||| |||| |||||||| || || ||||| ||||| || || || ||||| || || Sbjct 11514 GACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 11573 Query 171991 ATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 || || ||||| || ||||| || || || || Sbjct 11574 ATCTTCGCTGGCAAGCAGCTCGAGGACGGCCG 11605 >seq2676 Length=14567 Score = 118 bits (130), Expect = 1e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 ||||| ||||| ||||| || || || || ||||| ||| |||| ||||| || ||||| Sbjct 7743 TGTGTCGGTGTCTGGCAGAACGACCGGGTCGAGATCATCGCGAACGACCAGGGCAACCGG 7684 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || || || || ||||| || || || || ||| |||||| | || || || || || Sbjct 7683 ACCACGCCTTCCTACGTCGCGTTCACCGACGCTGAGCGTCTCATCGGTGACGCGGCCAAG 7624 Query 195452 AATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGC 195511 || ||| | || |||||||| | || || ||||| ||||||||||| || || || ||| Sbjct 7623 AACCAGTCCGCCATGAACCCGAGGAACACCGTCTTCGACGCGAAGCGCCTCATCGGCCGC 7564 >seq2900 Length=32347 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171880 ACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATC 171939 ||||| || || || || |||||||||||||| ||||| || ||||| ||||| ||| || Sbjct 25987 ACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCGACAACGTC 25928 Query 171940 AAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCT 171999 || || ||||| || || ||||| || || || ||||| ||||| || || || ||||| Sbjct 25927 AAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTCATCTTTGCC 25868 Query 172000 GGTAAACAGCTTGAAGATGGACG 172022 || || ||||| || || || || Sbjct 25867 GGCAAGCAGCTCGAGGACGGCCG 25845 >seq545 Length=28318 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 || |||||||| ||||||||||| ||||| ||||| ||| | || ||||| || ||||| Sbjct 3677 TGCGTTGGTGTCTGGCAAAATGACCGTGTCGAGATCATCGCCAACGACCAGGGCAACCGG 3736 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || || || || ||||||||||| || || | || ||||| | || || ||||| || Sbjct 3737 ACCACCCCGTCCTACGTTGCCTTCACCGACACCGAGCGTCTGATCGGTGACGCCGCCAAG 3796 Query 195452 AATCAGACAGCTATGAAC 195469 || ||||| || |||||| Sbjct 3797 AACCAGACCGCCATGAAC 3814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657837795946240