Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01- 21] 2,992 sequences; 32,128,072 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq41 87.8 2e-12 seq2512 82.4 9e-11 >seq41 Length=11186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| ||||||||||| ||||||||||| |||||||||||| || || |||||||| || Sbjct 4465 GTGCAGACCCTCGTCGCGGGAGATGAGCTCATTCGAGAAGGTAAGGCCGGGCATGAGGCC 4524 Query 130087 CCGCTTCTTCAACCAGAAAAT 130107 |||||||| | |||||| || Sbjct 4525 ACGCTTCTTAAGCCAGAAGAT 4545 >seq2512 Length=16788 Score = 82.4 bits (90), Expect = 9e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| ||||||||||| |||| |||||| ||||| | ||||| || | Sbjct 5309 CGCAGGTAGTACATGCCCGTCTTGAGGCCCTTCTTCCACGCATAGAAGTGCATGGAAGTG 5368 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA- 117955 | || | | | || || | | | || ||| | || ||| || |||||||| Sbjct 5369 AGCTGGCCGTGCGTCGGGGACTGGAGGTGGATGTTGAGGCTCTGGCTCTGGTCGATGAAC 5428 Query 117956 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCT 118015 ||| || || || ||||| | || || ||| ||||| |||| ||||| || ||| | Sbjct 5429 GCG-CCACGGTCGGCCGCGAGGTCGATGACAACCTTCTGGCTGATCTCCCAGACGGTCTT 5487 Query 118016 GTAGAGGTTCTTAATATCATCTGG 118039 |||||| | ||| || || || || Sbjct 5488 GTAGAGCTCCTTGATGTCCTCGGG 5511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618412070523520