Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01- 21] 2,992 sequences; 32,128,072 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2870 129 1e-24 seq2247 129 1e-24 seq2900 127 5e-24 >seq2870 Length=12576 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 || |||||||| || || ||||| |||||||| || ||| ||||| ||||| |||||| Sbjct 10059 ACCCTCACAGGCAAGACCATCACGCTCGAGGTCGAGTCCTCGGACACGATCGACAACGTC 10000 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || |||||||||||||| || || ||||| || |||||||| || | |||||||| Sbjct 9999 AAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCTTGATCTTCGCT 9940 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 || || ||||| || || || |||| || | || || ||| | || || || || || Sbjct 9939 GGCAAGCAGCTTGAGGACGGCCGGACCCTCTCGGACTACAACATTCAGAAGGAGTCGACG 9880 Query 178119 CTGCATCTTGT 178129 || ||||| || Sbjct 9879 CTCCATCTCGT 9869 >seq2247 Length=21484 Score = 129 bits (142), Expect = 1e-24 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || |||||||||||||||||||| || ||||||||| Sbjct 11454 TTCGTCAAGACCCTGACGGGTAAGACGATCACCCTCGAGGTGGAGTCTTCCGACACCATC 11513 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || |||||||| ||||| |||||||| || || ||||| || |||||||| || || Sbjct 11514 GACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 11573 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 |||||||| || || |||||||| || || Sbjct 11574 ATCTTCGCTGGCAAGCAGCTCGAGGACGG 11602 >seq2900 Length=32347 Score = 127 bits (140), Expect = 5e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 ||| | | || ||||| || || || ||||||||||||||||| || |||||||||| Sbjct 25995 TCGGGCAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACCATCG 25936 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| |||||| |||||||| || || ||||| || |||||||| || || | Sbjct 25935 ACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGCCTCA 25876 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGG 178078 |||| ||||| || |||||||| || || Sbjct 25875 TCTTTGCCGGCAAGCAGCTCGAGGACGG 25848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203685054964448