Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01-
21] 2,992 sequences; 32,128,072 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq2870 127 2e-24
seq305 122 8e-23
seq2247 114 1e-20
seq2900 84.2 2e-11
>seq2870
Length=12576
Score = 127 bits (140), Expect = 2e-24
Identities = 157/212 (74%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| ||||| ||||||||||||||| ||||| |||
Sbjct 9851 CCACCACGCAGACGGAGGACGAGATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAG 9910
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| || ||||||||||| ||||| |||| |||||| ||||| | ||
Sbjct 9911 AGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGG 9970
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| | || || | ||| | | | ||||| ||||| ||
Sbjct 9971 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 10029
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846
||| | ||| || || || || || || ||||
Sbjct 10030 CTCGAGCGTGATGGTCTTGCCTGTGAGGGTCT 10061
Score = 125 bits (138), Expect = 7e-24
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||| ||||| | || || || ||||| || ||||| ||||| ||||| ||
Sbjct 9560 GCCGCCGCGAAGACGGAGGACGAGGTGGAGCGTCGATTCTTTCTGGATGTTGTAGTCCGA 9619
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|||||| || |||| || ||||||||||| ||||| |||| |||||| ||||| | |||
Sbjct 9620 GAGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGG 9679
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| || | || || | ||| | | | ||||| ||||| |
Sbjct 9680 GATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCAA 9738
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846
|||| | ||| || ||||| || || || ||||
Sbjct 9739 CCTCGAGCGTGATGGTTTTGCCGGTGAGGGTCT 9771
>seq305
Length=9259
Score = 122 bits (134), Expect = 8e-23
Identities = 158/213 (74%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | || || || ||||| ||||||||| ||||| ||||| ||
Sbjct 7868 CCACCGCGGAGACGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 7927
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754
|||||||| |||| |||||||||||||| ||||| || |||||||| ||||| |||||
Sbjct 7928 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 7987
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || ||||||||| || | || || | ||| | | | ||||| ||||| |
Sbjct 7988 ATACCT-TCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGA 8045
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846
|||| | ||| ||||| || || || || ||||
Sbjct 8046 CCTCGAGCGTGATCGTCTTGCCGGTGAGGGTCT 8078
>seq2247
Length=21484
Score = 114 bits (126), Expect = 1e-20
Identities = 120/155 (77%), Gaps = 2/155 (1%)
Strand=Plus/Minus
Query 41700 TGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGC 41759
|||| |||| |||||||||||||| ||||| ||||||||||| ||||| | ||| | ||
Sbjct 11607 TGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGC 11548
Query 41760 TCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCC 41818
|||||||||| || | || || | ||| | | | |||||| |||||||||||
Sbjct 11547 CCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCG 11489
Query 41819 ACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853
| || ||||| ||||||||||| ||||| |||||
Sbjct 11488 AGGGTGATCGTCTTACCCGTCAGGGTCTTGACGAA 11454
>seq2900
Length=32347
Score = 84.2 bits (92), Expect = 2e-11
Identities = 109/148 (74%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 41700 TGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGC 41759
|||| |||| ||||||||||||||||| || || |||||||| ||||| | ||| | |
Sbjct 25843 TGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATAC 25902
Query 41760 TCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCC 41818
|||||||||| || | ||||| | ||| | | | ||||| |||||||||||
Sbjct 25903 CCTCCTTGTCC-TGGATCTTTGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCG 25961
Query 41819 ACCGTTATCGTTTTACCCGTCAGCGTCT 41846
| || || || || ||||| || ||||
Sbjct 25962 AGGGTGATGGTCTTGCCCGTGAGGGTCT 25989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462286709830400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |