Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Basidioascus_20undulatus_20[genbank_20GCA_5F000826855.1_202015-01- 21] 2,992 sequences; 32,128,072 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2870 127 2e-24 seq305 122 8e-23 seq2247 114 1e-20 seq2900 84.2 2e-11 >seq2870 Length=12576 Score = 127 bits (140), Expect = 2e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| ||||| ||||||||||||||| ||||| ||| Sbjct 9851 CCACCACGCAGACGGAGGACGAGATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCCGAG 9910 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||| ||||| |||| |||||| ||||| | || Sbjct 9911 AGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGCGGG 9970 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || | ||| | | | ||||| ||||| || Sbjct 9971 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 10029 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846 ||| | ||| || || || || || || |||| Sbjct 10030 CTCGAGCGTGATGGTCTTGCCTGTGAGGGTCT 10061 Score = 125 bits (138), Expect = 7e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | || || || ||||| || ||||| ||||| ||||| || Sbjct 9560 GCCGCCGCGAAGACGGAGGACGAGGTGGAGCGTCGATTCTTTCTGGATGTTGTAGTCCGA 9619 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || |||| || ||||||||||| ||||| |||| |||||| ||||| | ||| Sbjct 9620 GAGGGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGG 9679 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | || || | ||| | | | ||||| ||||| | Sbjct 9680 GATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCAA 9738 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846 |||| | ||| || ||||| || || || |||| Sbjct 9739 CCTCGAGCGTGATGGTTTTGCCGGTGAGGGTCT 9771 >seq305 Length=9259 Score = 122 bits (134), Expect = 8e-23 Identities = 158/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || ||||| ||||||||| ||||| ||||| || Sbjct 7868 CCACCGCGGAGACGCAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 7927 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 |||||||| |||| |||||||||||||| ||||| || |||||||| ||||| ||||| Sbjct 7928 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 7987 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| || | || || | ||| | | | ||||| ||||| | Sbjct 7988 ATACCT-TCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGA 8045 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846 |||| | ||| ||||| || || || || |||| Sbjct 8046 CCTCGAGCGTGATCGTCTTGCCGGTGAGGGTCT 8078 >seq2247 Length=21484 Score = 114 bits (126), Expect = 1e-20 Identities = 120/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 41700 TGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGC 41759 |||| |||| |||||||||||||| ||||| ||||||||||| ||||| | ||| | || Sbjct 11607 TGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGC 11548 Query 41760 TCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCC 41818 |||||||||| || | || || | ||| | | | |||||| ||||||||||| Sbjct 11547 CCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCG 11489 Query 41819 ACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | || ||||| ||||||||||| ||||| ||||| Sbjct 11488 AGGGTGATCGTCTTACCCGTCAGGGTCTTGACGAA 11454 >seq2900 Length=32347 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 41700 TGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGC 41759 |||| |||| ||||||||||||||||| || || |||||||| ||||| | ||| | | Sbjct 25843 TGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATAC 25902 Query 41760 TCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCC 41818 |||||||||| || | ||||| | ||| | | | ||||| ||||||||||| Sbjct 25903 CCTCCTTGTCC-TGGATCTTTGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCG 25961 Query 41819 ACCGTTATCGTTTTACCCGTCAGCGTCT 41846 | || || || || ||||| || |||| Sbjct 25962 AGGGTGATGGTCTTGCCCGTGAGGGTCT 25989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462286709830400