Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bjerkandera_20adusta_20[JGI_20Bjead1_5F1_202011-05-24] 508 sequences; 42,730,300 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 seq1 109 6e-19 >seq4 Length=1918071 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| |||| || |||||||| ||||| ||||| || | || || || | Sbjct 1157696 ACGAAGCACCAAGTGCAGCGTACTCTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGTCC 1157755 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || ||||| || ||||| ||||| ||||||||||||| ||| | | |||||| Sbjct 1157756 ATCTTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTT 1157815 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || || | ||| | | | ||||||| || || || || | |||| Sbjct 1157816 GTCCTGGATCTTCGCCTTCA-CGTTGTCAATCGTGTCGGAAGACTCGACCTCAAGAGTGA 1157874 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || || ||||| || ||||| ||||| Sbjct 1157875 TAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1157911 Score = 113 bits (124), Expect = 5e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | ||| || || |||| || ||||||||||||||||| Sbjct 1157999 CTCCTTCTGGATGTTGTAATCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 1158058 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || |||||||| || | || | || ||||||| | ||| | || | | ||| Sbjct 1158059 GATAAGACGCTGCTGATCCGGGGGAATGCCTTCCTTGT-CTTGAATCTTCGCCTTTACGT 1158117 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||||| |||||| || || | ||||| || || ||||| | |||||| | Sbjct 1158118 TGTCGATCGTGTCGGACGATTCGACCTCAAGGGTGATCGTCTTTCCCGTCAACGTCTTGA 1158177 Query 43171 CAAAGATTTGCATT 43184 | ||||| |||||| Sbjct 1158178 CGAAGATCTGCATT 1158191 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || ||| | || || | |||||| || || || Sbjct 1158227 CTCCTTCTGGATGTTGTAGTCGGACAACGTGCGCCCATCTTCCAACTGCTTTCCGGCAAA 1158286 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||| || |||| || | | ||||||||| ||| ||| || | ||| Sbjct 1158287 GATGAGACGCTGTTGATCGGGAGGGATACCCTCCTTGTCTTGGATCTTTGCCTTAA-CGT 1158345 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || || | |||||||| ||||| || |||||||| | Sbjct 1158346 TGTCGATGGTGTCGGACGACTCTACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGA 1158405 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 1158406 CGAAGATTTGCAT 1158418 >seq1 Length=3319996 Score = 109 bits (120), Expect = 6e-19 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 42975 ACCAA-ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||||| ||||||||||| || || || || || | ||||| || | || || Sbjct 2718541 ACCAAGATGCAGCGTGCTCTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCATCCTC 2718600 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| ||||| ||||||||||||| || | | |||||| ||| | Sbjct 2718601 GAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGTGGGATACCCTCCTTATCC-T 2718659 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | || | | ||| | | | ||||| || ||||| || | |||||||| | Sbjct 2718660 GAATCTTCGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCT 2718719 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||| ||||| Sbjct 2718720 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2718750 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | || || || |||| || || ||||| || || || Sbjct 2719065 CTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAA 2719124 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| || | || |||||||||| ||| ||| || | ||| Sbjct 2719125 GATAAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCA-CGT 2719183 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| ||||| || |||||||| || ||||| | Sbjct 2719184 TGTCGATCGTGTCCGAAGACTCGACTTCGAGAGTGATCGTCTTGCCCGTAAGGGTCTTGA 2719243 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 2719244 CGAAGATCTGCAT 2719256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813968958240