Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bjerkandera_20adusta_20[JGI_20Bjead1_5F1_202011-05-24] 508 sequences; 42,730,300 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4 104 2e-17 seq1 98.7 1e-15 >seq4 Length=1918071 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || ||||||||||| || |||| ||| ||||| || |||||| Sbjct 1157994 GTTGACTCCTTCTGGATGTTGTAATCCGACAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 1158053 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| |||||||| || || |||||||| ||||| ||| || ||| Sbjct 1158054 GCGAAGATAAGACGCTGCTGATCCGGGGGAATGCCTTCCTTGTCTTGAATCTTCGCCTTT 1158113 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | ||| || |||| || | |||||| || ||||| || Sbjct 1158114 ACGTTGTCGATCGTGTCGGACGATTCGACCTCAAGGGTGATCGTCTTTCCCGTCAACGTC 1158173 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 1158174 TTGACGAAGATCTGCAT 1158190 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | ||| | || || || || || |||||||| ||| | Sbjct 1158192 CCACCACGGAGACGGAGAACAAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1158251 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| | ||||| | || || || ||| |||| ||||| || ||||||||||| Sbjct 1158252 AACGTGCGCCCATCTTCCAACTGCTTTCCGGCAAAGATGAGACGCTGTTGATCGGGAGGG 1158311 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || ||| || | | || | ||||| | | ||||| Sbjct 1158312 ATACCCTCCTTGTCTTGGATCTTTGCCTTAACGTTGTCGATGGTGTCGGACGACTCTACC 1158371 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||||||||| | || || ||||| ||||||||| Sbjct 1158372 TCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGAAGATTTGCATA 1158419 >seq1 Length=3319996 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||||| || || || |||||||||||| | |||| ||| |||||||| Sbjct 2719054 TGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCGAGTTGC 2719113 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || ||| |||| || || ||||| ||||| || ||||| || ||||| || ||| Sbjct 2719114 TTGCCGGCAAAGATAAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTT 2719173 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | |||||||| | || ||||| | ||| | ||||||||| || Sbjct 2719174 GCCTTCACGTTGTCGATCGTGTCCGAAGACTCGACTTCGAGAGTGATCGTCTTGCCCGTA 2719233 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || ||||| || |||||| Sbjct 2719234 AGGGTCTTGACGAAGATCTGCATA 2719257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507011180458560