Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bjerkandera_20adusta_20[JGI_20Bjead1_5F1_202011-05-24] 508 sequences; 42,730,300 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq9 105 1e-17 seq5 102 2e-16 seq8 84.2 4e-11 >seq9 Length=1298041 Score = 105 bits (116), Expect = 1e-17 Identities = 148/204 (73%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | || ||||| || || |||| |||| | ||||| ||| || | Sbjct 627579 GGTCCCAACGGTTCCGGCAAGTCGACTCTCGTCAAGCTCCTCATCGGCGACACCGAGCCG 627638 Query 280239 A-CTGAGG-GGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | ||| || ||| | |||||||| || ||| || || | |||||||| ||||| Sbjct 627639 AACTGCGGTGGTGAGACATGGAAGCACCCTAACTTGGTTATCGGCTACGTCGCCCAGCAT 627698 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 ||||||||||||||||| |||||||| |||| ||| ||| | | ||||| | ||||| Sbjct 627699 GCTTTCCACCACATCGACAACCACCTCGACAAGACCCCTCTCGAGTACATGCTCTGGCGT 627758 Query 280356 TATGCAAGTGGGCAGGATCTGGAG 280379 ||| | ||| ||||||| ||| Sbjct 627759 TATCAGACTGGTGAGGATCTTGAG 627782 Score = 95.1 bits (104), Expect = 2e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || ||||||||||||||||| || ||||| |||| || || || | ||||| Sbjct 627102 CTTTCTGGTGGTTGGAAGATGAAACTCGCCCTTGCTCGTGCGATCCTCTTCAAGGCCGAC 627161 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 |||| |||| |||||||| || |||||| ||||| | |||||| || ||||| | | Sbjct 627162 ATCCTGTTGCTCGATGAGCCCACGAACCACTTGGACGTCGTCAACGTCGCTTGGCTCGAG 627221 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| | |||| | | | ||| |||| ||||| |||||||| |||||| Sbjct 627222 AACTACCTCATTGGTCTCACTCACTGCACGTCCATCATCGTCTCGCACGACTCCGGCTTC 627281 >seq5 Length=1807594 Score = 102 bits (112), Expect = 2e-16 Identities = 362/550 (66%), Gaps = 33/550 (6%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| |||||||| || ||||| |||||||| || | || |||||||| | || Sbjct 1325653 GTGCATGCCCTCGTCACGGCTGATCAACTCGTTCGAGAAGGTGAGACCAGGCATGAGTCC 1325594 Query 251904 ACGGTTCCTGAGCCAGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACAC 251962 ||| ||| ||||||||||||| | ||| ||||| |||||||| | | ||||||||| Sbjct 1325593 ACGCTTCTTGAGCCAGAAGATGGACGC-GAAGGAGCCAGAGAAGAAAATACCCTCGACGG 1325535 Query 251963 ACACCCATGCAACAAGGCGCTCAGCAAAC---GACTTGTCCTGCGACAAGAACTTCTGTG 252019 | | || ||||| || ||||| ||| ||||| | | || | || | | Sbjct 1325534 CAGCGAAGGCGACAAGACGTTCAGCGAACGAAGACTTCTTGTCGGAGATCCACCGGAGGG 1325475 Query 252020 CCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC 252079 |||| | |||||||| | ||||| || |||| || || ||||| | | ||| Sbjct 1325474 CCCAGTCAGCCTTCTTCTTGATGCAAGGGATGGTCTCGACCGCGTCGAAGAG-GTGCTCC 1325416 Query 252080 ----GCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGG 252135 ||| || ||| | |||| || || | ||||| ||||| |||| || ||| Sbjct 1325415 CGTTGCTTGG---GGTCTTTGATGTACGTGTCGATGAGGAGGGAGTATGTCTCAGAGTGG 1325359 Query 252136 ATGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGG--TG-ACT 252192 ||| || | | || ||| | |||||| || ||| | || ||| || ||| Sbjct 1325358 ATGTTCTCCATCATAATTTGGAAGCCATAGA--AGCAGCGAGCCTCGG-CGGCCTGAACT 1325302 Query 252193 TCCGTGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAG 252252 || | || || | | | |||||| | || || || ||| | |||| |||||| Sbjct 1325301 TCGTTAGAGAAACGCTCGACGAGGTTCTCGTTGACGATACCGTCGGAGGCTGCGAAGAAG 1325242 Query 252253 CCAAG--AATGGTCTTGATGAAGTGACGCTCATCGTCGTTGA---GCTTGTCACGCCAGT 252307 |||| |||| || |||||| ||||||| |||||||| || ||| ||||| Sbjct 1325241 GCAAGGACATGG--GAGACGAAGTGGCGCTCATTGTCGTTGAGACGCGTGT---TCCAGT 1325187 Query 252308 CGGCAATGTCCTGATTCAGAGGAACTTCT--TCCACCGTCCAGAATGTGGACACCGCCTT 252365 || | |||| | ||||| | ||| ||| | |||||||| | || | | ||||| Sbjct 1325186 CGTGGAGATCCT--TGGAGAGGTCCATCTCCTCCGCGGTCCAGAAAGAGGCCTCAGCCTT 1325129 Query 252366 CTTGTACATT 252375 |||||||||| Sbjct 1325128 CTTGTACATT 1325119 Score = 100 bits (110), Expect = 6e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 || || || ||||| |||||||| || | |||||||| || ||||| | |||||| Sbjct 1326004 TAATCTGAGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATG 1325945 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGG 251664 |||||||| ||||| ||| | ||||| ||| | ||| || || |||| | |||| Sbjct 1325944 AAGTCGAAAGGGTTGGTGACCTTGTAGAACTTCTCGTCGCCGAGGGCAACGAGCAGGCGG 1325885 Query 251665 TCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || ||||| ||||| | ||||| | ||| || | | |||||||||||| Sbjct 1325884 TCGGCCACGAACTCGATGTACTGGCACATGAGCTTCGCGTTCATGCCAAT 1325835 >seq8 Length=1462401 Score = 84.2 bits (92), Expect = 4e-11 Identities = 222/337 (66%), Gaps = 4/337 (1%) Strand=Plus/Minus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGACTTCAGTGT--GG 293089 || || |||||||||||||| ||||||| ||||| || | |||| || || Sbjct 1396832 GTCTTCAGACCCTTCTTCCAGCCGTAGAAGTGCATACTCGTGAGCTGGTTCACGGTCGGG 1396773 Query 293090 GAGTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAG 293149 || || |||| | ||||| |||||| |||| | ||||| ||||| || || | Sbjct 1396772 GACTG--CAGGTGCACGTTCAAGCTCTGGCTCTGGCAAATGAAGGCGCCACGGTCCGCGG 1396715 Query 293150 CGAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGCCTTGACAT 293209 | || || | || ||||| ||||||||||| |||||||| | |||||||||| Sbjct 1396714 CAAGCTCGAGGACCTTCTTCTGTGAGATCTCCCAAACGGTCTTGTAGATCGCCTTGACAT 1396655 Query 293210 CAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCA 293269 | | ||||| | | | |||||||| || ||| || || | | |||||||| Sbjct 1396654 CCTCGGGTATGCCGTTGATGCTTTGGATAGAGCCGTTGTTCGCGATGAGCATGTTCTTCA 1396595 Query 293270 TTGTCTCGGACCAAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGG 293329 | ||| ||| ||| | | | |||||| |||| | | | | ||| || Sbjct 1396594 TCTCTTCGTTCCAGAGGCCAAGGTCGACGAGCTCACGGAGCAACCACGGGCAGACGACCT 1396535 Query 293330 GGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTT 293366 |||| |||||||| || |||||| |||| ||||| Sbjct 1396534 GGAATTCACCAGCAAGGACGCGACGAGTGTAGATGTT 1396498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830110067228