Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bjerkandera_20adusta_20[JGI_20Bjead1_5F1_202011-05-24] 508 sequences; 42,730,300 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 111 4e-19 seq4 105 2e-17 >seq1 Length=3319996 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || ||||||||| | ||||| || ||| ||| Sbjct 2719253 CAGATCTTCGTCAAGACCCTTACGGGCAAGACGATCACTCTCGAAGTCGAGTCTTCGGAC 2719194 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||| || || || || || ||| || ||| || Sbjct 2719193 ACGATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAG 2719134 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| ||||| ||||| | || || || | || | ||||||||||| || Sbjct 2719133 CGCCTTATCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCTCCGATTACAACATC 2719074 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||||||||||||||| Sbjct 2719073 CAGAAGGAGTCTACTCTTCACCTTGT 2719048 >seq4 Length=1918071 Score = 105 bits (116), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| ||||| || || || || ||||| | || || || || ||||| |||| Sbjct 1158404 CAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTAGAGTCGTCCGACACCATCGACAA 1158345 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||| ||||| || || || || || || || | || ||||| Sbjct 1158344 CGTTAAGGCAAAGATCCAAGACAAGGAGGGTATCCCTCCCGATCAACAGCGTCTCATCTT 1158285 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||||||||||||| | || ||| |||| |||||| ||||||| ||||| Sbjct 1158284 TGCCGGAAAGCAGTTGGAAGATGGGCGCACGTTGTCCGACTACAACATCCAGAAGGAGTC 1158225 Query 206364 TACTCTTCACCTTGTT 206379 ||||| || |||||| Sbjct 1158224 GACTCTCCATCTTGTT 1158209 Score = 104 bits (114), Expect = 6e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | || ||||| |||||||| | || || ||| || ||| Sbjct 1158187 CAGATCTTCGTCAAGACGTTGACGGGAAAGACGATCACCCTTGAGGTCGAATCGTCCGAC 1158128 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||||||||| || ||||| ||| ||||| || Sbjct 1158127 ACGATCGACAACGTAAAGGCGAAGATTCAAGACAAGGAAGGCATTCCCCCGGATCAGCAG 1158068 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || |||||| | || || || | || || | ||||||||| || Sbjct 1158067 CGTCTTATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTGTCGGATTACAACATC 1158008 Query 206353 CAGAAAGAGTCTACTCTTCACCTTG 206377 ||||| ||||| || || || |||| Sbjct 1158007 CAGAAGGAGTCAACCCTCCATCTTG 1157983 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 |||||| || ||||| ||||| ||||||| || ||||| | ||| || | |||||||| Sbjct 1158209 AACAAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAACGTGCGCCCATCTTC 1158268 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||||||||| ||||| || || |||||| Sbjct 1158269 CAACTGCTTTCCGGCAAAGATGAGACGCTGTTGA 1158302 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || |||||| | || || || ||| ||| Sbjct 1157908 CAGATCTTCGTCAAGACCCTCACCGGAAAGACTATCACTCTTGAGGTCGAGTCTTCCGAC 1157849 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || ||| ||| || Sbjct 1157848 ACGATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAGCAG 1157789 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||||||||| | ||||||||| | || | |||| |||||| | Sbjct 1157788 CGCCTCATCTTCGCCGGAAAGCAACTCGAAGATGGACGCACGCTCTCCGACTACAACATT 1157729 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||| ||| || ||| Sbjct 1157728 CAGAAGGAGAGTACGCTGCAC 1157708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181813107823868