Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 178 2e-39 seq7 104 3e-17 >seq5 Length=1773785 Score = 178 bits (196), Expect = 2e-39 Identities = 470/715 (66%), Gaps = 2/715 (0%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||||||| | | |||| | | | || || ||||| || ||||| | | Sbjct 909752 TTCAAACTCGGCGCTGTGGACATCGGCGAGGCCGGGGCATTCGGAGGGGCACATGAGGGT 909693 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| || || || || ||||| ||||| || ||||| || ||||| || || || Sbjct 909692 CCAGTCACCATCCGACTCGACTCGCTTCATGAACAGATCGGGGATCCAGAGGGCGTAGAA 909633 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 ||||||| | || | ||| || || || |||||| | || |||||||| | | Sbjct 909632 GAGATCTCGTGCTCGAACTTCTTCTTTACCGTGGTTCTTTCTTAGGTCGAGGAAGTCGAA 909573 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 | || | ||||| || || | ||| |||| | | ||||| || ||||| || || Sbjct 909572 GACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAACGCACCAGGTCGCTTGTTGCCACC 909513 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||| || | |||| || ||| | || | || | |||||||| ||||| ||||| Sbjct 909512 CTGGTCGACATATCGGGCCGTGGCGTCGTATGCCCTTAGCATTGGAACGATACCGTTGGA 909453 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 ||| ||||| |||| || ||| || |||| || || || ||| ||||| Sbjct 909452 GTAACCGTTGGTACCGGCAATGTAGGAACCCTTGGCTCGGATGTTGTGAATGTGGAGACC 909393 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369 || || || || | || ||||| ||||| || | ||| || ||||| || || Sbjct 909392 GATACCACCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGCGTCTCGTAGATACCGTC 909333 Query 54370 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 54429 || || || |||| | || ||||| ||||||||| | || || Sbjct 909332 GATCGAGTCGTCTCGCATGGCGACGAGGAAACACGAGGACATTTGGGGGTTGGGTGTACC 909273 Query 54430 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 54489 || || || || || || || ||||| ||||| || || || | || ||||| || Sbjct 909272 CGAGTTGAACAATGTTGGCGAGGCGTGGGTAAAGTATCGCTCGGACATGAGGTTGTAGGT 909213 Query 54490 CTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGT 54548 ||||| || ||| || | || | || || || || ||||||||||| | ||||| Sbjct 909212 CTCGAGGACTCGGTCAATGTTGGCACCG-TGGATACCGACGGCGACACGCATAATCATGT 909154 Query 54549 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTT 54608 ||||||||| ||| ||||||||| ||| ||| ||| | |||||| || | || | Sbjct 909153 GCTGAGGTCGTTCGACGATCTTGCCGTTGATTCTCAAGAGGTAGGACCGCTCTAGGGTCT 909094 Query 54609 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 | ||||| ||| ||||||| | ||||||||| ||||| || || | |||| ||| Sbjct 909093 TGAAACCGAAAAAGTTGTAGGCAAAGTCTCGGTCGTAGATGATGGCAGAGTCGAG 909039 >seq7 Length=1004146 Score = 104 bits (114), Expect = 3e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || ||| ||| ||||||||||| || || || ||||| || || ||||| Sbjct 957023 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCCCTCGAGATCAACTCGTTCGAGAAGGTGAG 957082 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 ||||||||| || || ||||| || | ||| || || || || || || ||||| ||||| Sbjct 957083 TCCGGGCATGAGACCTCGCTTCTTCAACCAGAAGATCGAGGCGAAAGAACCAGAGAAGAA 957142 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTC 24285 || || || || || |||||||| || |||| Sbjct 957143 GATACCCTCGACGGCGGCAAAGGCGATCAGTC 957174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721540627840