Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 168 7e-37 seq1 127 2e-24 >seq7 Length=1004146 Score = 168 bits (186), Expect = 7e-37 Identities = 332/486 (68%), Gaps = 4/486 (1%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| | || ||||| || || || ||| || | | |||||| | ||||| || | Sbjct 957267 TGTTCGAGGCTATCGACACCATCCCCTGCATCCAGAAAAAGGCCAACTGGGCCCTCAAGT 957208 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGC-GAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||||| | | | || | || ||| || ||||| ||| | ||||| || ||||||||| Sbjct 957207 GGATCTCGGAC-GACCGATCGACTTTCGCTGAGCGACTGATCGCCTTTGCCGCCGTCGAG 957149 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || ||||||| || || ||||||| | || || ||| | ||||| || || |||||| Sbjct 957148 GGTATCTTCTTCTCTGGTTCTTTCGCCTCGATCTTCTGGTTGAAGAAGCGAGGTCTCATG 957089 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 ||||| || || ||| |||||| | ||||| |||||||||||||| || ||||||| Sbjct 957088 CCCGGACTCACCTTCTCGAACGAGTTGATCTCGAGGGACGAGGGTCTCCACACCGACTTT 957029 Query 117185 GCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATC 117244 |||||| | || |||| || | | ||||| | | | ||| | |||| Sbjct 957028 GCCTGTCTCCTCTTCACCCACCTCCGACGACGACCCCACCCAGACACTGTCGAGAGGATC 956969 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTG 117304 ||| || || ||| |||||||| ||||||||||| || ||||| || || Sbjct 956968 ATCAAAGAGGCCGTCAAGATCGAGCAAGAGTTCCTCACCGACGCTCTGCCAGTCTCGCTC 956909 Query 117305 CTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCT 117363 | ||| | || | | || | |||| || ||||||||||| ||||||||| | ||||| Sbjct 956908 ATTGGAATGAACT-CTAAGCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGACTGCT 956850 Query 117364 GCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCT 117423 ||| || | || |||| | ||| | ||||||| | ||||||||| | | Sbjct 956849 TGTCGCCCTTGGTAACGACAAGGTGTGGAACGTGTCCAACCCCTTCGACTTTATGGAGAT 956790 Query 117424 CATCTC 117429 ||||| Sbjct 956789 GATCTC 956784 Score = 145 bits (160), Expect = 8e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || |||||||| || || || ||||| |||| |||||| | | Sbjct 973439 AATGCAGATCTTCGTCAAGACGCTCACCGGAAAGACGATCACGCTCGAGGTCGAATCTTC 973498 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| ||||| || |||| ||||| |||||||| || | |||| Sbjct 973499 GGACACCATCGACAACG-TCAAGAGCAAGATTCAGGACAAGGAGGGCATACCACCTGACC 973557 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| |||||||||| ||| ||||||||||| || |||| | || || |||||||| Sbjct 973558 AGCAGCGACTCATCTTCGCCGGCAAACAGCTCGAGGACGGCAGAACTCTGTCCGACTACA 973617 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| | || |||| || || |||| Sbjct 973618 ACATCCAGAAGGAGTCGACCTTGCACCTGGTTCTGCG 973654 Score = 122 bits (134), Expect = 9e-23 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 ||||| |||||||||||||| | || ||||| || | |||| | | | |||| Sbjct 974024 CTCACCGGCAAAACCATCACGCTGGAGGTCGAGTCCTCTGACACGATCGACAATGTCAAA 974083 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| ||||| ||||| | ||||||||||| ||||||| ||| || Sbjct 974084 TCGAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAGCAACGTCTCATCTTCGCTGGA 974143 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || |||||||| |||| || ||||| | |||||||||||||||||||||| | || || Sbjct 974144 AAGCAGCTGGAGGACGGTCGAACCCTGAGCGACTACAACATCCAGAAGGAGTCGACTCTT 974203 Query 40891 CA 40892 || Sbjct 974204 CA 974205 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||||||| | || || || | | |||| | | | | ||||| Sbjct 973746 ACAGGAAAGACCATCACCCTGGAGGTGGAGTCTTCGGACACCATTGACAATGTCAAGTCG 973805 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| |||||||| ||| | |||||||||||||| |||| ||| || ||| Sbjct 973806 AAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAACGACTGATCTTCGCTGGTAAA 973865 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | || ||| | |||||||||||||||||||||| | || || || Sbjct 973866 CAGCTTGAGGATGGACGAACCTTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAC 973925 Query 40894 CTAGT 40898 || || Sbjct 973926 CTTGT 973930 Score = 100 bits (110), Expect = 3e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||||||||||||| |||| ||||| | | Sbjct 972875 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAAACCATCACCCTCGAGGTCGAGTCTTCG 972934 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| ||||| ||||| | |||||| Sbjct 972935 GACACAATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 972994 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 || ||| | |||| ||| || || |||||||| |||| || |||||| ||||||| Sbjct 972995 CAGCGATTGATCTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTCTCGGACTACA 973052 >seq1 Length=8012737 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||||||||||||||||||| | || ||||| | | |||| | | | |||| |||| Sbjct 2303668 CTCACGGGCAAAACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGACAACG-TCAA 2303610 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| ||||| ||||| | |||||||| |||||||||| ||| || Sbjct 2303609 GTCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAGCAGCGACTCATCTTCGCCGG 2303550 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||||| || || || | || || || |||||||||||||||||||||| | || || Sbjct 2303549 TAAACAACTCGAGGATGGTCGAACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCT 2303490 Query 40890 GCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || | || ||||| || || Sbjct 2303489 CCACCTCGTCCTTCGATTGAGAGGTGG 2303463 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 |||| ||| | | ||||| || ||||| ||||||||| ||||||| || ||| | Sbjct 7388793 CCTTTCGCGTGAGACTGGTTGCTTTCGCTTGCGTCGAGGGAATCTTCTTCTCTGGCTCCT 7388734 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACG 117146 | |||||||| || ||| | ||||| | || ||||||||||||||||||||| ||| | Sbjct 7388733 TTGCCGCCATCTTCTGGTTGAAGAAGAGGGGTCTCATGCCCGGCCTGACTTTCTCCAATG 7388674 Query 117147 AGCTCATCTCCAGGGACGAGGG 117168 || | ||| |||||||||||| Sbjct 7388673 AGTTGATCAGCAGGGACGAGGG 7388652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219148478080