Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7 129 5e-25 seq1 114 1e-20 >seq7 Length=1004146 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| || ||| | |||||| Sbjct 973648 ACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCTGCCGTCCTCG 973589 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || ||| ||||||| |||||||| || || ||||||||||||||||| | Sbjct 973588 AGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGTATGCCCTCCTTGTCCTGA 973529 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||||| |||||||||| || | ||| || Sbjct 973528 ATCTTGCTCTTGACGTTGTCGATGGTGTCCGAAGATTCGACCTCGAGCGTGATCGTCTTT 973469 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || |||||||| Sbjct 973468 CCGGTGAGCGTCTTGACGAAGATCTGCAT 973440 Score = 125 bits (138), Expect = 6e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||||||| || || ||||| Sbjct 974211 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGACCGTCCTCC 974152 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||||||||| ||||| ||||| || || ||||||||||| Sbjct 974151 AGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGG 974092 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| ||||| | | ||||||||| | || | |||||| Sbjct 974091 ATCTTCGATTTGACATTGTCGATCGTGTCAGAGGACTCGACCTCCAGCGTGATGGTTTTG 974032 Query 118710 CCGGTCAGA 118718 ||||| ||| Sbjct 974031 CCGGTGAGA 974023 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || || |||||||| ||| || || || |||||| ||||| Sbjct 973925 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTTCGTCCATCCTCAAGCTG 973866 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| |||||| |||| || || ||||| || || || |||||||||||||| ||| || Sbjct 973865 TTTACCAGCGAAGATCAGTCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTT 973806 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||||| ||| ||||| | ||| | || || || || Sbjct 973805 CGACTTGACATTGTCAATGGTGTCCGAAGACTCCACCTCCAGGGTGATGGTCTTTCCTGT 973746 Query 118715 CA 118716 || Sbjct 973745 CA 973744 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || ||||| ||||| ||| |||| | |||||||| || ||||| || ||||||||| Sbjct 973029 TCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 972970 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| ||||||| ||||||||||| ||| | Sbjct 972969 TCCTGGATCTTGGACTTGACATTGTCGATTGTGTCCGAAGACTCGACCTCGAGGGTGATG 972910 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || ||||| |||||||| Sbjct 972909 GTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 972875 Score = 86.0 bits (94), Expect = 5e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 44846 ACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTTCGGGGAGT 44905 ||||| || || ||| || |||| || ||| ||||| || | ||||| || || | Sbjct 957187 ACTTTCGCTGAGCGACTGATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCTGGTTCT 957128 Query 44906 TTTGCGGCGATATTTTACATGAA-AACCAAGGGAGTGATGCCCGGACTGACGTTTAGCAA 44964 || || |||| || | |||| || | ||| | ||||||||||| || || || Sbjct 957127 TTCGCCTCGATCTTCTGGTTGAAGAAGCGAGGTC-TCATGCCCGGACTCACCTTCTCGAA 957069 Query 44965 CGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCTC 45013 ||| ||||| ||||| ||||| ||||| |||||| |||||||||| ||| Sbjct 957068 CGAGTTGATCTCGAGGGACGAGGGTCTCCACACCGACTTTGCCTGTCTC 957020 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||| |||||||| || ||| ||||||| |||||||| || || || || ||||||||| Sbjct 973307 TCCTCCAGCTGTTTACCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGAATTCCCTCCTTG 973248 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| ||||||| ||||||||| | || | | Sbjct 973247 TCCTGGATCTTGCTCTTCACATTGTCGATAGTGTCCGAAGACTCGACCTCCAAAGTAATC 973188 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || || || |||||||| Sbjct 973187 GTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 973153 >seq1 Length=8012737 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || || |||||||| ||| || ||| || ||||||||| || Sbjct 2303486 GTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGACCATCCTCGAGTTG 2303545 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| || ||| ||||||| |||||||| || || || || ||||||||||| || || Sbjct 2303546 TTTACCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTT 2303605 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| ||||||||| | ||| | |||||||| || Sbjct 2303606 GGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTTTTGCCCGT 2303665 Query 118715 CAG 118717 || Sbjct 2303666 GAG 2303668 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 118561 TGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCT 118620 |||| ||||| | ||| || |||||| | |||||| || ||| ||||||| ||||||| Sbjct 963618 TGTAGTCGCTGAGAGTTCGGCCATCCTCCAACTGTTTACCGGCGAAGATGAGTCGCTGCT 963559 Query 118621 GATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG 118680 | || || || || ||||||||||| || || || || | |||| ||||||| Sbjct 963558 GGTCAGGTGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCG 963499 Query 118681 TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 | ||||||||||| ||| | || || || || || Sbjct 963498 AGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAG 963462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830357701536