Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7 125 8e-24 seq1 91.5 2e-13 >seq7 Length=1004146 Score = 125 bits (138), Expect = 8e-24 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||||| |||| ||||| || |||||| || || ||||| || | | Sbjct 973666 CCACCTCGCAGACGCAGAACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 973607 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | |||| || ||||| || || ||||| ||||||||||||||||| | || Sbjct 973606 AGAGTTCTGCCGTCCTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGT 973547 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | || |||||||||| ||| | || | |||| ||| | | | ||||| ||||| | Sbjct 973546 ATGCCCTCCTTGTCC-TGAATCTTGCTCTTGA-CGTTGTCGATGGTGTCCGAAGATTCGA 973489 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | |||| |||||| || || || || |||||||| || ||||| |||||| Sbjct 973488 CCTCGAGCGTGATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCATT 973439 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 ||| || || ||||| | || | ||||| || | || |||||| || || ||||| Sbjct 974236 CTACTGACCACCTCTGAGTCGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTA 974177 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || ||| || || |||| || |||||||| |||||||| ||||| || |||||||| Sbjct 974176 GTCGCTCAGGGTTCGACCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTC 974117 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 43129 || || | | |||||||||| ||| || ||||| | | | |||||| || Sbjct 974116 GGGTGGGATACCCTCCTTGTCCTGGATCTTCGATTTGACATTGTCGATCGTGTCAGAGGA 974057 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 || || || | ||||||||||||||| || || Sbjct 974056 CTCGACCTCCAGCGTGATGGTTTTGCCGGTGAG 974024 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 43006 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 43065 |||| || | || || || |||| || |||||||| || ||||| || | |||||||| Sbjct 973052 TGTAGTCCGAGAGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCT 972993 Query 43066 GGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGC 43125 |||| | || | | |||||||||| ||| || |||| | | | ||||| Sbjct 972992 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCCG 972933 Query 43126 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || |||| |||||||||||||| || || ||||| |||||||| ||||| Sbjct 972932 AAGACTCGACCTCGAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 972875 >seq1 Length=8012737 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | |||||| || | || || || || ||||| ||||| Sbjct 2303498 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGACCATCCTCGAGTTGTTTACCGGCGAA 2303557 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||||||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 2303558 GATGAGTCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 2303616 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 | | | ||||| || || || || | ||||||||||||||||| || Sbjct 2303617 TGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTTTTGCCCGTGAG 2303668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817542818240