Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 105 5e-18 seq7 104 2e-17 >seq1 Length=8012737 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||| | || | ||| || || ||||||||| |||||||||||| | Sbjct 2303463 CCACCTCTCAATCGAAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 2303522 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || |||||||| |||||||| || | ||||| ||||| || || Sbjct 2303523 AGAGTTCGACCATCCTCGAGTTGTTTACCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGG 2303582 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || || ||| || | | | ||||| | ||| ||| Sbjct 2303583 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 2303642 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAG 45315 || | ||| || || |||||||| || Sbjct 2303643 TCAAGGGTGATGGTTTTGCCCGTGAG 2303668 >seq7 Length=1004146 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | || | |||||||| || || ||||||||| |||||||||||| || Sbjct 974229 CCACCTCTGAGTCGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 974170 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| ||||| || ||||| ||||| || | || || |||||||| || Sbjct 974169 AGGGTTCGACCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCGGGTGGG 974110 Query 45230 ACACCCTCCTTGTCC 45244 | ||||||||||||| Sbjct 974109 ATACCCTCCTTGTCC 974095 Score = 98.7 bits (108), Expect = 8e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 45180 CGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCT 45239 |||| ||||| || ||||||||||| ||||| ||||| ||||| ||||| | |||||||| Sbjct 973031 CGTCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCT 972972 Query 45240 TGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAA 45299 ||||| || || ||| || | | ||||| | ||| ||||| | ||| | Sbjct 972971 TGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCCGAAGACTCGACCTCGAGGGTGA 972912 Query 45300 TCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || ||||| || || ||||| |||||||| ||||| Sbjct 972911 TGGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 972875 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | | |||| ||||| || ||||||||| |||||||||||| | Sbjct 973666 CCACCTCGCAGACGCAGAACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 973607 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | |||| || || ||||| |||||||| || | ||||| ||||| || || Sbjct 973606 AGAGTTCTGCCGTCCTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGT 973547 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||| || ||| || | | | ||||| | || ||| Sbjct 973546 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTGTCCGAAGATTCGACC 973487 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || |||||||| || || || ||||| || ||||| ||||| Sbjct 973486 TCGAGCGTGATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCAT 973440 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 45180 CGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCT 45239 |||| ||||| ||||| |||||||| || | ||||| ||||| || || | ||||||| Sbjct 973309 CGTCCTCCAGCTGTTTACCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGAATTCCCTCCT 973250 Query 45240 TGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAA 45299 ||||| || || ||| || | | ||||| | ||| ||||||| |||| Sbjct 973249 TGTCCTGGATCTTGCTCTTCACATTGTCGATAGTGTCCGAAGACTCGACCTCCAAAGTAA 973190 Query 45300 TCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| || || || ||||| || ||||| ||||| Sbjct 973189 TCGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 973153 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCG 45202 ||||||||| |||||||||||| || ||| || | || || || ||||| || ||| Sbjct 973913 CTCCTTCTGGATGTTGTAGTCGGACAAGGTT--CGTCCATCCTCAAGCTGTTTACCAGCG 973856 Query 45203 AATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACC 45262 || |||| || || ||||| || || | |||||||||||| ||| || ||| || Sbjct 973855 AAGATCAGTCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACA 973796 Query 45263 GCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCA 45314 | | | ||||| | ||||||||||| ||| || ||||| || |||| Sbjct 973795 TTGTCAATGGTGTCCGAAGACTCCACCTCCAGGGTGATGGTCTTTCCTGTCA 973744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075161480168