Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-35 seq7 105 9e-18 >seq5 Length=1773785 Score = 165 bits (182), Expect = 1e-35 Identities = 438/666 (66%), Gaps = 6/666 (1%) Strand=Plus/Minus Query 71984 CATTCGGA----CACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039 |||||||| ||||| | | ||| || ||||| | ||||| ||||| || ||| Sbjct 909715 CATTCGGAGGGGCACATGAGGGTCCAGTCACCATCCGACTCGACTCGCTTCATGAACAGA 909656 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 || || ||||| || || || ||||||| | || | || || || || ||| Sbjct 909655 TCGGGGATCCAGAGGGCGTAGAAGAGATCTCGTGCTCGAACTTCTTCTTTACCGTGGTTC 909596 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 ||| | || |||||||| | | | || | ||||| || || | ||| ||||| | Sbjct 909595 TTTCTTAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAAC 909536 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | || || || ||||| || ||||| || | |||| || ||| | || | || Sbjct 909535 GCACCAGGTCGCTTGTTGCCACCCTGGTCGACATATCGGGCCGTGGCGTCGTATGCCCTT 909476 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | |||||||| ||||| ||||| ||| ||||| |||| || ||| || |||| Sbjct 909475 AGCATTGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTAGGAACCCTTGGCT 909416 Query 72280 CGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 72339 || || ||| ||| ||||| || || || || | || ||||| ||||| Sbjct 909415 CGGATGTTGTGAATGTGGAGACCGATACCACCGGCAGTCTTGGAGATCTGGGCGCAGGTC 909356 Query 72340 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 || | ||| || ||||| || || || || || |||| | || ||||| Sbjct 909355 TTGAGCGTCTCGTAGATACCGTCGATCGAGTCGTCTCGCATGGCGACGAGGAAACACGAG 909296 Query 72400 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 72459 ||||||||| | || |||| || || || || || || ||||| ||||| || Sbjct 909295 GACATTTGGGGGTTGGGTGTACCCGAGTTGAACAATGTTGGCGAGGCGTGGGTAAAGTAT 909236 Query 72460 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCC 72518 || |||| || ||||| ||||| | || || || | || | || || || Sbjct 909235 CGCTCGGACATGAGGTTGTAGGTCTCGAGGACTCGGTCAATGTTGGCACCG-TGGATACC 909177 Query 72519 TACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 72578 || ||||||||||| | ||| |||||||||| ||| ||||||||| || ||| |||| Sbjct 909176 GACGGCGACACGCATAATCATGTGCTGAGGTCGTTCGACGATCTTGCCGTTGATTCTCAA 909117 Query 72579 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 72638 | |||||| || | || || ||||| ||| ||||||| | ||||||||| ||||| Sbjct 909116 GAGGTAGGACCGCTCTAGGGTCTTGAAACCGAAAAAGTTGTAGGCAAAGTCTCGGTCGTA 909057 Query 72639 AATAAT 72644 || || Sbjct 909056 GATGAT 909051 >seq7 Length=1004146 Score = 105 bits (116), Expect = 9e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || ||| ||| |||||||| || || || || ||||| || || ||||| Sbjct 957023 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCCCTCGAGATCAACTCGTTCGAGAAGGTGAG 957082 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 ||||||||| || || ||||| || | ||| || || || || || || ||||| ||||| Sbjct 957083 TCCGGGCATGAGACCTCGCTTCTTCAACCAGAAGATCGAGGCGAAAGAACCAGAGAAGAA 957142 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 42219 ||| || || || || |||||||| || |||| ||| Sbjct 957143 GATACCCTCGACGGCGGCAAAGGCGATCAGTCGCTC 957178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139132886080