Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 149 9e-31 seq5 145 1e-29 >seq7 Length=1004146 Score = 149 bits (164), Expect = 9e-31 Identities = 289/421 (69%), Gaps = 13/421 (3%) Strand=Plus/Minus Query 125340 GCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT 125399 || |||||||| | || | || | |||||||| | |||| | ||||||| Sbjct 957259 GCTATCGACACCATCCCCTGCATCCAGAAAAAGGCCAACTGGGCCCTCAAGTGGATCTCG 957200 Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 |||||| || | | ||| || ||||| | || || |||||||| ||||| |||||| Sbjct 957199 GACGACCGATCGACTTTCGCTGAGCGACTGATCGCCTTTGCCGCCGTCGAGGGTATCTTC 957140 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || || ||| ||| || | ||||| ||| | |||||||| || |||||||||||||| Sbjct 957139 TTCTCTGGTTCTTTCGCCTCGATCTTCTGGTTGAAGAAGCGAGGTCTCATGCCCGGACTC 957080 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 || | |||||||| || || | |||||||| || ||| ||||||||| ||| Sbjct 957079 ACCTTCTCGAACGAGTTGATCTCGAGGGACGAGGGTCTCCACACCGACTTTGCCTGTCTC 957020 Query 125580 CTGTTTCGCAACTATCTGCGTCCCGA-GTGCAGATCCAG-CGATGAAAAGGTCATCAACA 125637 || || || | | || || ||| | | | |||| | || || |||| || Sbjct 957019 CTCTT---CACCCACCTCCG--ACGACGACCCCACCCAGACACTGTCGAGAGGATCATCA 956965 Query 125638 TTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCA 125697 || || ||||| | ||| || |||||||| || ||||| | || || ||| Sbjct 956964 ----AA--GAGGCCGTCAAGATCGAGCAAGAGTTCCTCACCGACGCTCTGCCAGTCTCGC 956911 Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 | ||||| ||||||| ||||| |||||| ||||||| |||||||| || || || || | Sbjct 956910 TCATTGGAATGAACTCTAAGCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGACTGC 956851 Query 125758 T 125758 | Sbjct 956850 T 956850 >seq5 Length=1773785 Score = 145 bits (160), Expect = 1e-29 Identities = 356/533 (67%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||| || ||| || | || |||||||| || ||| | || | | | ||| Sbjct 909441 ACCAACGGTTACTCCAACGGTATCGTTCCAATGCTAAGGGCATACGACGCCACGGCCCGA 909500 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || || ||||| ||||| || || || || || | ||| ||||| | || || ||| Sbjct 909501 TATGTCGACCAGGGTGGCAACAAGCGACCTGGTGCGTTCGCCATCTACCTCGAGCCATGG 909560 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| || ||||| |||| | | || ||| || ||||| | ||| Sbjct 909561 CACGCCGACGTCTTCGACTTCCTCGACCTAAGAAAGAACCACGGTAAAGAAGAAGTTCGA 909620 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | || | || || || |||||| | || ||| ||||||||||||| ||| | | | Sbjct 909621 GCACGAGATCTCTTCTACGCCCTCTGGATCCCCGATCTGTTCATGAAGCGAGTCGA-GTC 909679 Query 97047 GG-TGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 || ||| |||||| ||| ||||||||| | | ||||| || ||||| | | Sbjct 909680 GGATGGTGACTGGACCCTCATGTGCCCCTCCGAATGCCCCGGCCTCGCCGATGTCCACAG 909739 Query 97106 CGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAG-AGGGCCGATACGTGAGAC 97161 || |||||||| ||| ||| || |||||||| | || | ||| |||| Sbjct 909740 CGCCGAGTTTGA---AAAGCTCTACGAGGGCTACGAGCGTGCTGGAAAGGGACGAAAGAC 909796 Query 97162 GAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | || | || | | | || ||| ||||| | ||| ||| |||||||| || | Sbjct 909797 CA-TCAAAGCGCAAAAGCTCTGGTTCGCCATTCTCGAGGCCCAGACCGAGACTGGTACCC 909855 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | ||||| |||||||| || ||| || ||| ||||| | ||| | ||||| | Sbjct 909856 CATACATGCTCTACAAAGACGCCGCCAACGCCAAGTCTAACCAGCAACACCTCGGCACGA 909915 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| |||||| |||||||| || || | |||||| | || || |||||| Sbjct 909916 TCAAGTCCTCCAACCTGTGCACTGAGATCATCGAGTACTCTTCCCCCGACGAG 909968 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTG--ATCGATATGGCTGCCGACA 98094 ||||||||||||||||||||||| | |||| | |||| ||||| | || || ||| Sbjct 910686 ATCTACAAGACTGTCTGGGAGAT--CTCCCAAAAGGCTGTCATCGACCTCGCCGCTGACC 910743 Query 98095 GAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACA 98154 |||||| | ||| ||||||||||| ||||| | || | || | || | || | Sbjct 910744 GAGGTGCTTTCATCGACCAGAGTCAGAGTCTCAATATCCACCTGTCCAACCCGAGCTTCT 910803 Query 98155 GTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 || | || ||||| |||||||||| ||||| ||| ||||||||||| || |||| Sbjct 910804 CTCAACTCACCTCGATGCACTTTTACGGCTGGAAGCGGGGACTCAAGACGGGTATCTACT 910863 Query 98215 ATCTGAGAAC 98224 | || |||| Sbjct 910864 ACCTCCGAAC 910873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059125894080