Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7 127 5e-24 seq1 100 7e-16 >seq7 Length=1004146 Score = 127 bits (140), Expect = 5e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || || || || || || ||||| || || ||||| Sbjct 973669 ATACCACCTCGCAGACGCAGAACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCG 973610 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| ||||| || || ||||| || || || || || | ||| || ||||| Sbjct 973609 GACAGAGTTCTGCCGTCCTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGGTCAGGT 973550 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTC 104508 ||||| || || || ||||||||| ||||| || || || || | ||| || || ||| Sbjct 973549 GGTATGCCCTCCTTGTCCTGAATC-TTGCTCTTGACGTTGTCGATGGTGTCCGAAGATTC 973491 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || ||||| || || || || || || || ||||||||| Sbjct 973490 GACCTCGAGCGTGATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCATT 973439 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 || |||||||| || || ||||| ||||| || || ||||| ||| | ||||| |||||| Sbjct 957166 GCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCTGGTTCTTTCGCCTCGATCTTCTGGTTG 957107 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260 ||||| |||| || ||||| ||| | || ||||| ||||| ||||| |||||||| Sbjct 957106 AAGAAGCGAGGTCTCATGCCCGGACTCACCTTCTCGAACGAGTTGATCTCGAGGGACGAG 957047 Query 269261 GGTTTACACTGCGACTTCGCTTGT 269284 ||| | ||| |||||| || ||| Sbjct 957046 GGTCTCCACACCGACTTTGCCTGT 957023 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || || | ||||| || ||||| || || ||||| Sbjct 973951 ATACCACCTCGGAGTCGGAGAACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 973892 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||| || || || || ||||| ||||| || || || | || || ||||| Sbjct 973891 GACAAGGTTCGTCCATCCTCAAGCTGTTTACCAGCGAAGATCAGTCGTTGCTGGTCAGGG 973832 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| | || ||||| || | ||| || || || Sbjct 973831 GGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCC 973772 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || || || ||||| || || Sbjct 973771 ACCTCCAGGGTGATGGTCTTTCCTGT 973746 >seq1 Length=8012737 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 |||||||| || || || || || ||||| || || || |||||||| ||||| ||| Sbjct 7388776 GTTGCTTTCGCTTGCGTCGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCTGG 7388717 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| || || || ||||| || | |||||||| || || ||||| ||||||||| Sbjct 7388716 TTGAAGAAGAGGGGTCTCATGCCCGGCCTGACTTTCTCCAATGAGTTGATCAGCAGGGAC 7388657 Query 269258 GAAGG 269262 || || Sbjct 7388656 GAGGG 7388652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398281981664