Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7 113 4e-20 seq1 95.1 1e-14 >seq7 Length=1004146 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||| || |||| |||| |||||| || || ||||| || | ||| | Sbjct 973674 TTTGCATACCACCTCGCAGACGCAGAACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGT 973615 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || ||| || ||||| |||||||| ||| | ||||| | || ||||| | Sbjct 973614 AGTCGGACAGAGTTCTGCCGTCCTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGGT 973555 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || ||||| | ||| || ||||||| | ||| ||||| | Sbjct 973554 CAGGTGGTATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTGTCCGAAG 973495 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | |||||| || ||||| || || || || || ||||||||||| Sbjct 973494 ATTCGACCTCGAGCGTGATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCAT 973440 Score = 105 bits (116), Expect = 6e-18 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | ||| | |||||||| | ||| || ||||| || | ||| || |||||| Sbjct 974229 CCACCTCTGAGTCGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 974170 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | | ||| || ||||||||||| ||||| | ||||| | | |||||| || || | Sbjct 974169 A--GGGTTCGACCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCGGGTG 974112 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||| || ||||| | || || | ||||| | ||| ||||||| | |||| Sbjct 974111 GGATACCCTCCTTGTCCTGGATCTTCGATTTGACATTGTCGATCGTGTCAGAGGACTCGA 974052 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 | || | |||||||||||| || || ||| Sbjct 974051 CCTCCAGCGTGATGGTTTTGCCGGTGAGA 974023 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| |||||| | ||||| |||| ||||| || ||||| ||||| || ||| Sbjct 973029 TCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTG 972970 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | ||| ||||| | ||||| || | |||||| Sbjct 972969 TCCTGGATCTTGGACTTGACATTGTCGATTGTGTCCGAAGACTCGACCTCGAGGGTGATG 972910 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || || || |||||||||||||| Sbjct 972909 GTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 972875 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 |||||||||||||| ||| | ||||| | || ||||| || || ||||| || || ||| Sbjct 973307 TCCTCCAGCTGTTTACCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGAATTCCCTCCTTG 973248 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||| || | ||| |||||| | ||||| || | || || Sbjct 973247 TCCTGGATCTTGCTCTTCACATTGTCGATAGTGTCCGAAGACTCGACCTCCAAAGTAATC 973188 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||||||||| || || || ||||||||||| Sbjct 973187 GTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 973153 >seq1 Length=8012737 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||||||| | || | ||| | ||||| ||||| || | ||| || ||| Sbjct 2303463 CCACCTCTCAATCGAAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG--G 2303520 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| || |||||| || ||||| ||| | ||||| | || ||||| || || | Sbjct 2303521 ACAGAGTTCGACCATCCTCGAGTTGTTTACCGGCGAAGATGAGTCGCTGCTGGTCAGGTG 2303580 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||| || ||||| | || || | ||||||| | ||| ||||| | |||| Sbjct 2303581 GGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGA 2303640 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAG 94986 | |||| ||||||||||| || || || Sbjct 2303641 CCTCAAGGGTGATGGTTTTGCCCGTGAG 2303668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291155170880