Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 136 8e-27 seq7 96.9 7e-15 >seq1 Length=8012737 Score = 136 bits (150), Expect = 8e-27 Identities = 154/204 (75%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | ||||| || ||||| |||| |||| ||||| |||||| || || Sbjct 1883793 GGTCCCAACGGTTCCGGTAAATCCACCCTCGTCAAGCTCCTCACTGGAGAGACCGAGCCC 1883852 Query 280239 AC--TGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | ||| |||| |||| |||||||| |||||| || || | ||||||||| |||||| Sbjct 1883853 AACTTGAAGGGTACCGTGTGGAAGCACCCCAACTTGGTCATTGGTTACGTCGCCCAGCAC 1883912 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 ||||||||||||||||| |||||||| ||| || ||| | | ||||| |||||| Sbjct 1883913 GCTTTCCACCACATCGACAACCACCTCGACTCTACCCCTCTCGAGTACATGTTGTGGCGA 1883972 Query 280356 TATGCAAGTGGGCAGGATCTGGAG 280379 || | || ||||||||||| Sbjct 1883973 TACCAGACCGGTGAGGATCTGGAG 1883996 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 280719 GGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCT 280778 |||||||| ||||| ||||||||||| | ||| |||| || || |||| || || Sbjct 1884351 GGTCTTTCCGGAGGTCAGAAGGTCAAGGTCGTCCTCGGTGCCGCGACTTGGCGACGACCC 1884410 Query 280779 CACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCT 280837 ||||| ||| |||||||||||| ||||||||||||||||| ||| ||| | ||| || Sbjct 1884411 CACGTCATCTGTCTCGACGAGCCAACCAACTATCTGGACCGAGAGTCCCTCGCCGCCCT 1884469 Score = 84.2 bits (92), Expect = 4e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| ||||| |||||||||||||||||||| ||||| | || || || || | Sbjct 1883310 GGTTCGCTGTCTGGTGGTTGGAAGATGAAGCTCGCCCTTGCCCGAGCTATCCTGTTCAAG 1883369 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| |||| ||||| || ||||| || |||||| |||| |||||| | |||| Sbjct 1883370 GCCGACATCCTCCTGCTCGACGAGCCCACTAACCACTTGGATGTTCTCAACGTCGACTGG 1883429 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 | | |||||| ||| || | | | | || |||| ||||| |||||||| Sbjct 1883430 TTGATCAACTACCTCACCTCGCTCACCACCTGTACCTCGATCATCGTCTCGCACGACTCC 1883489 Query 279879 GGCTTC 279884 | |||| Sbjct 1883490 GACTTC 1883495 >seq7 Length=1004146 Score = 96.9 bits (106), Expect = 7e-15 Identities = 377/583 (65%), Gaps = 11/583 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | |||||| |||||||||||||| | Sbjct 956757 TCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGAC 956816 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | || || |||| | ||||| || || | | ||||| || |||||||| | Sbjct 956817 ACGTTCCACACCTTGTCGTTACCAAGGGCGACAAGCAGTCGGTCGGCGACAAACTCGATG 956876 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGAATTGCCTCACAGAT 251741 ||||| | ||| || | ||||||||| ||||| | ||| | || | || || || Sbjct 956877 TACTGGCACATGAGCTTAGAGTTCATTCCAATGA-GCGAGACTGGCAGAGCGTCGGTGAG 956935 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT-TCACCTGTGCCAGAGACA 251800 ||| || | ||| | || ||||| | | || ||| || | ||| | | | Sbjct 956936 GAACTCTTGCTCGATCTTGACGGCCTCTTTGATGAT--CCTCTCGACAGTGTCTGGGTGG 956993 Query 251801 GCTTGTTCTC-CAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 | | || || || | | | | ||||| | |||| | ||| ||||||||||| Sbjct 956994 GGTCGTCGTCGGAGGTGGGTGAAGAGGAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCC 957053 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 | ||| |||||||| || | || || ||||| | || || ||| | | |||| Sbjct 957054 CTCGAGATCAACTCGTTCGAGAAGGTGAGTCCGGGCATGAGACCTCGCTTCTTCAACCAG 957113 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 ||||| | | || || |||||||| | | ||||||||| | | || | || Sbjct 957114 AAGATCGAGGCGAAAGAACCAGAGAAGAAGATACCCTCGACGGCGGCAAAGGCGATCAGT 957173 Query 251980 CGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTT 252036 |||||||| || ||| ||| | ||| | |||| | ||||| | || | | ||| Sbjct 957174 CGCTCAGCGAAAGTCGATCGGTCGTCCGAGATCCACTTGAGGGCCCA-GTTGGCCTTTTT 957232 Query 252037 CCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 | || |||||| || ||||| || || || || | | || ||| |||||| Sbjct 957233 CTGGATGCAGGGGATGGTGTCGATAGCCTCGAACAGGTATGTTCGTCGGGCGGCGTCCTT 957292 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 |||| | || | ||||||||||| |||| || |||||| Sbjct 957293 GATGTATGTGTCGATGAGGAGAGAGTAGGTCTCGGAGTGGATG 957335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836694646728