Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7 178 2e-39 seq1 143 5e-29 seq4 102 2e-16 >seq7 Length=1004146 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| ||| | || ||||| || |||||||| || ||||| Sbjct 973666 CCACCTCGCAGACGCAGAACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 973607 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || || || || | ||| || |||||||| ||||||| || ||||| ||||| Sbjct 973606 AGAGTTCTGCCGTCCTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGT 973547 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| ||||||| ||||||||||| | ||||| || Sbjct 973546 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTGTCCGAAGATTCGACC 973487 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||||| || ||||| ||||| ||||||||||| ||||||||| Sbjct 973486 TCGAGCGTGATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCATT 973439 Score = 132 bits (146), Expect = 9e-26 Identities = 394/592 (67%), Gaps = 17/592 (3%) Strand=Plus/Plus Query 9971 CTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 |||||||||||||| |||||||| ||| || || | |||||| ||||| |||||||| Sbjct 956756 CTCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGA 956815 Query 10031 GGCG--CCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCG 10088 || ||| || |||| || ||| || || | | ||||| || || |||||| Sbjct 956816 CACGTTCCACAC--CTTGTCGTTACCAAGGGCGACAAGCAGTCGGTCGGCGACAAACTCG 956873 Query 10089 ATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCG-GCAGGGGATGGCGTCGCA 10147 |||||||||| ||| || | |||||||| ||||| | ||| | || | |||||| Sbjct 956874 ATGTACTGGCACATGAGCTTAGAGTTCATTCCAATGA-GCGAGACTGGCAGAGCGTCGGT 956932 Query 10148 AATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGGGA 10207 | ||| || | ||| | ||| || || | || ||| |||| || ||| ||| Sbjct 956933 GAGGAACTCTTGCTCGATCTTGACGGCCTCTTTGATGATCCTCTCGACAGTGTC-TGGGT 956991 Query 10208 CAGCTTGTTCTC-GAGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGT 10266 | | || || ||| | | | ||||| |||| | |||||| ||||||| Sbjct 956992 GGGGTCGTCGTCGGAGGTGGGTGAAGAGGAGACAGGCAAAGTCGGTGTGGAGACCCTCGT 957051 Query 10267 CGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCC 10326 | | ||| |||||||| || || || ||||||||||| || || || || || Sbjct 957052 CCCTCGAGATCAACTCGTTCGAGAAGGTGAGTCCGGGCATGAGACCTCGCTTCTTCAACC 957111 Query 10327 AGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGA 10386 |||| || | | ||| || || ||||| | | |||||| ||| | |||||| | Sbjct 957112 AGAAGATCGAGGCGAAAGAACCAGAGAAGAAGATACCCTCGACGGCGGCAAAGGCGATCA 957171 Query 10387 GGCGCTCTGCGAA---GGAGCGGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCT 10443 | ||||| ||||| || |||||| ||| | | || |||| || | || | | | Sbjct 957172 GTCGCTCAGCGAAAGTCGATCGGTCGTCCGAGATCCACTT-GAGGGCCCAGTTGGCCTTT 957230 Query 10444 TTCCCACGGCA-GGGATCGTCTCGATAGCCTCGAAGAGCT-TGTTACGCTCGGTC-TCGT 10500 ||| ||| ||||| || |||||||||||||| || | |||| || |||| | ||| Sbjct 957231 TTCTGGATGCAGGGGATGGTGTCGATAGCCTCGAACAGGTATGTT-CG-TCGGGCGGCGT 957288 Query 10501 CCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTC 10552 ||| || | || | ||| || ||||| |||| ||||| | |||| Sbjct 957289 CCTTGATGTATGTGTCGATGAGGAGAGAGTAGGTCTCGGAGTGGATGTTCTC 957340 Score = 129 bits (142), Expect = 1e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || ||||| || | || ||||| | |||||| |||||||| || | || || ||| Sbjct 973050 TAGTCCGAGAGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGG 972991 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| || ||||| | |||||| ||||| ||||| | Sbjct 972990 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCCGAA 972931 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || | |||||||||||| || |||||||||||||| || |||||||| Sbjct 972930 GACTCGACCTCGAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 972875 Score = 127 bits (140), Expect = 4e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || ||||| || |||||||| || ||| || || | || || || Sbjct 974211 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGACCGTCCTCC 974152 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| ||||| | ||| ||||||||||| || || |||||||| || Sbjct 974151 AGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGG 974092 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | ||||| ||||| ||||| | || || || |||| ||||||||||| Sbjct 974091 ATCTTCGATTTGACATTGTCGATCGTGTCAGAGGACTCGACCTCCAGCGTGATGGTTTTG 974032 Query 68433 CCCGTGAG 68440 || ||||| Sbjct 974031 CCGGTGAG 974024 Score = 125 bits (138), Expect = 1e-23 Identities = 134/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || || || || || || | ||| || |||||||| ||||||| || ||| Sbjct 973328 TAGTCCGAAAGAGTTCTGCCGTCCTCCAGCTGTTTACCGGCGAAGATGAGTCGCTGCTGG 973269 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || |||||||| || |||||||| || ||||| ||| || ||||| ||||| | Sbjct 973268 TCAGGTGGAATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATAGTGTCCGAA 973209 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || ||||| || || || ||||| || |||||||||||||| ||||||||| Sbjct 973208 GACTCGACCTCCAAAGTAATCGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCATT 973152 >seq1 Length=8012737 Score = 143 bits (158), Expect = 5e-29 Identities = 142/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || ||||| || |||||||| || ||||| || || | ||||| || | || Sbjct 2303486 GTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGACCATCCTCGAGTTG 2303545 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || |||||||| ||||||| || ||||| ||||| || || |||||||| || ||||| Sbjct 2303546 TTTACCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTT 2303605 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | ||||||| ||||||||||| | || || || || | |||||||||||| ||||| Sbjct 2303606 GGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTTTTGCCCGT 2303665 Query 68438 GAGG 68441 |||| Sbjct 2303666 GAGG 2303669 Score = 102 bits (112), Expect = 2e-16 Identities = 441/681 (65%), Gaps = 26/681 (4%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||| ||||||| | ||||| ||| |||||||| || || ||||||||| Sbjct 1883974 TATCGCCACAACATGTACTCGAGAGGGGTAGAGTCGAGGTGGTTGTCGATGTGGTGGAAA 1883915 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCC--CGAG 225095 || |||||||| ||||| | ||| || |||||| ||||||||||| | ||| | || Sbjct 1883914 GCGTGCTGGGCGACGTAACCAATGACCAAGTTGGGGTGCTTCCACACGGTACCCTTCAAG 1883855 Query 225096 -TCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | || | | ||| || ||||||| ||||| ||| || | || || | ||| ||||| Sbjct 1883854 TTGGGCTCGGTCTCTCCAGTGAGGAGCTTGACGAGGGTGGATTTACCGGAACCGTTGGGA 1883795 Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCTGC---GAGTTCAC-----GTTGCTGA 225206 || | | | | | || || || | | |||||| ||| | | ||||||| Sbjct 1883794 CCGAGAATGGCGACTCGAGACGAGAGGGAGACCTGCAGAGAGATGTCGTACAGTTGCTG- 1883736 Query 225207 AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGT 225266 || | | || | |||| || | ||| | |||| ||| | | | | Sbjct 1883735 -GACGGCCGATCC---TGGGTACTGGAACGAAACGTCTCGCATCTTGAGCAGCGACTTCT 1883680 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACT--TGGT-CACCG 225323 |||| | | | ||| || || | || | ||||| || ||| | || | || Sbjct 1883679 CCTTTGTCTTGACACCGTCGAGCAGAGGAGGGTTGGGGAGCTTGAACTGGTAGTCCTCCT 1883620 Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTC-GGGTCGCTTTGCCACGAAAGCAGACAGG 225382 | | | || | |||||| | ||||| ||| || | | |||||||| ||| Sbjct 1883619 GGACGTCGAGCTGGTAGTAGGCCTTGGCCTCTGGGACG-TGCTCGACGAAAGCCTCGAGG 1883561 Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442 || ||| ||| || ||||||||| ||| ||| || | || || | || || Sbjct 1883560 TTACCGGGGTATCTCTTGAGCTTGAAGTTGTTCAAGTGCAGGAC-ATCGGTGATGGTCCT 1883502 Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTT 225501 | |||| |||| | |||||||| || || ||||| || | ||| | | || || | Sbjct 1883501 G-TTCAA-GAAGTCGGAGTCGTGCGAGACGATGATCGAGGTACA-GGTGGTGAGCGAGGT 1883445 Query 225502 GAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAG 225561 ||||| |||| | ||| | |||||| || |||| |||||| || || ||||| || Sbjct 1883444 GAGGTAGTTGATCAACCAGTCGACGTTGAGAACATCCAAGTGGTTAGTGGGCTCGTCGAG 1883385 Query 225562 AAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCC 225621 || |||||||| || | | ||||| || || | || | |||||||| ||||| || Sbjct 1883384 CAGGAGGATGTCGGCCTTGAACAGGATAGCTCGGGCAAGGGCGAGCTTCATCTTCCAACC 1883325 Query 225622 CCCGGACAGGGAGCCGATTGA 225642 || ||||| || ||||| || Sbjct 1883324 ACCAGACAGCGAACCGATAGA 1883304 Score = 89.7 bits (98), Expect = 9e-13 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 225410 TTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGAC 225469 |||| |||||| || | ||| | | || || ||| | ||| ||||||||||| || Sbjct 169697 TTCTCCTCGTAGTGGATAATGTCGGTACAGACATTGTCCAAGAATCCAGAGTCGTGCGAG 169756 Query 225470 ACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCATGCCACG--T 225527 || || ||| ||| || | ||||||| ||| | | |||||| || ||| | Sbjct 169757 ACGATCATGCACGTCATCTCGCTCAGGCCACAGAGATACTCTTCGAGCCAAGCGACGGTT 169816 Query 225528 TGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGA 225587 ||| ||||||| ||| || ||||| || ||||| || || ||||| || |||| | | Sbjct 169817 TGC--ACGTCCAAGTGATTGGTAGGCTCATCCAGCAGGAGAATGTCGGCTCCAATCAACA 169874 Query 225588 TGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACA 225629 |||| || | ||| |||||||| ||||| || || |||| Sbjct 169875 TGGCTCGAGCGAGCTCGAGCTTCATCTTCCAACCACCAGACA 169916 >seq4 Length=1991585 Score = 102 bits (112), Expect = 2e-16 Identities = 106/135 (79%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 268453 CTCACGG-TAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAAC 268511 ||||| | ||||||||||| ||||||||||| ||| |||||| || |||||||| | Sbjct 1739103 CTCACCGATAGTTCACGACGGTCCAGTATGCGTACAGCTTTGCTACGCCGTACGGACTTC 1739162 Query 268512 GTGGATGGAAGGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCG 268570 |||| | ||| ||||| || || || || || || || | |||||||||| |||||||| Sbjct 1739163 GTGGGTAGAATGGCGT-GTCCTCATTCTGGGGTATCTCCCTGACTTTGCCATAGAGCTCG 1739221 Query 268571 GAGGTCGATGCTTGG 268585 || ||||| || ||| Sbjct 1739222 GAAGTCGAGGCCTGG 1739236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622307837760