Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 444 1e-119 seq7 289 5e-73 seq1 111 3e-19 >seq5 Length=1773785 Score = 444 bits (492), Expect = 1e-119 Identities = 1185/1783 (66%), Gaps = 67/1783 (4%) Strand=Plus/Minus Query 243878 TTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCC 243937 ||||| ||| |||||||||| ||| | | || || ||||| | | ||||| || Sbjct 910777 TTGAGACTCTGACTCTGGTCGATGAAAGCACCTCGGTCAGCGGCGAGGTCGATGACAGCC 910718 Query 243938 TTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCG 243997 || || || ||||| | | ||||||||||| | |||||||| ||||| | Sbjct 910717 TTTTGGGAGATCTCCCAGACAGTCTTGTAGATCGCCTTGAGGTCGGAGGGGATCTGAGGA 910658 Query 243998 ATGTTCTGCACCGAGCC-CTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAG 244056 |||||||| | || || | | || |||||| || | |||||| |||||||| || Sbjct 910657 ATGTTCTGGATGGAACCACCAGCGG-CGATGATGAGGTTCTTCATGTTGTCGTTCCAGAG 910599 Query 244057 GCCCAAGC-GCTCCAGCGCCTCGACCAGGTGCC-TGTTCA--CCACCTGAAACTCTCCCG 244112 |||||| | || || |||| |||| ||| || || | ||||| || ||||| | Sbjct 910598 ACCCAAGTTGATCAAGT--CTCG--CAGGAGCCATGGGCAAACGACCTGGAAGTCTCCAG 910543 Query 244113 ACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCA 244172 ||||||| ||||| ||| || | || ||||||| || ||| | ||| | Sbjct 910542 ACAGCACTCGGCGGGCGTACAGCATCGACGTGTATGGCTCGAAGCACTCGTTCCAGCCGA 910483 Query 244173 GTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGT 244232 | ||||| | ||| || || ||||| || | ||||| || ||| | ||| |||| Sbjct 910482 GAATCTGAGACGTCGAAGCCGTTGGCATTGGGGCGACCAGGAGCGAGTTTCGCACACCGT 910423 Query 244233 GCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTT 244292 || | || | || ||||||| |||||||||| | | | | | ||| |||| Sbjct 910422 GCTTGGCAATCTTGCTTCGGAGCTCGGTCCAGTCCCAGAGGTCGGTG-GGTACTCGA--- 910367 Query 244293 TGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCG 244352 ||||||||||| || |||||| |||| || || |||||||| ||| Sbjct 910366 -----CCCCACATGTCGAATTGCAGCTTGCCCTGCGAGATTGGCGATCCCTCGTACGTCT 910312 Query 244353 GGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGG 244412 ||| ||||| || |||| || || | ||||| ||||||| |||||||| Sbjct 910311 CGTACTTGCCGTCCTTCTCAGCCATCTCGCACGAGGCTTCGAGTGCGGCGTGGTAGATGG 910252 Query 244413 TCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG-GTGAAGGGGATGCCCATC 244471 ||||||||||| |||| | || || || |||| || || || ||| | | Sbjct 910251 TCTCGAAGATCTGAATGTTGAGCTCTCGAGCG--GCCGGAGAGTCAAAGGGCAGTCGGAG 910194 Query 244472 ATC-ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTT 244530 | | ||||| ||||||| || || || || |||| |||| ||||||||||||| |||| Sbjct 910193 AGCCATGAACGCGTCGGCGAGACCTTGGACACCGAGTCCGACGGGTCTGTGTCGCATGTT 910134 Query 244531 GGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCG 244590 ||| |||| || |||||||| |||| | ||| |||| || |||||| Sbjct 910133 GGACGTTTTGGCCTCTTTGACGGGGTAGTAGTTTCGAGAGATGACCTGGTCGAGGTTCTT 910074 Query 244591 GGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGC 244650 ||||| | | || ||| ||| || |||||||| || | ||| | | Sbjct 910073 GGTGACGACTTTGGTGATCTCGTGAAGCTTCTTGAAGTCGTAGACGCGTCGTTCCATGTC 910014 Query 244651 GATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTC 244710 || ||||| || ||| |||| | || |||||||||||||| ||||| Sbjct 910013 GA------------CAAACGCGGGGAGTGCGAGGGAAGCGAGGTTGCAGACGGCGACCTC 909966 Query 244711 CTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAG 244770 || | | | ||||| || ||||| ||||| ||||| | ||||||| ||||| || Sbjct 909965 GTCGGGGGAAGAGTACTCGATGATCTCAGTGCACAGGTTGGAGGACTTGATCGTGCCGAG 909906 Query 244771 GTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGT 244830 ||| || || || |||||||||||| |||||| |||||||||||| | || || || Sbjct 909905 GTGTTGCTGGTTAGACTTGGCGTTGGCGGCGTCTTTGTAGAGCATGTATGGGGTACCAGT 909846 Query 244831 CTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGC 244890 |||| |||||| |||| | | | |||||| | || |||| ||| | || | Sbjct 909845 CTCGGTCTGGGCCTCGAGAATGGCGAACCAGAGCTTTTGCGCTTTGATGGTCTTTCGTCC 909786 Query 244891 CTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTC 244950 ||| || | |||||||| ||| || || ||||||| || ||| ||| | Sbjct 909785 CTTTCCAGCACGCTCGTAGCCCTCGTAGAGCTTTTCAAACTCGGCGCTGTGGACATCGGC 909726 Query 244951 TAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTG 245010 ||||||||||| | ||||||||||| |||| || || | || ||| | || Sbjct 909725 GAGGCCGGGGCATTCGGAGGGGCACATGAGGGTCCAGTCACCATCCGACTCGACTCGCTT 909666 Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC-CCTGGT----CCTCTGCTCG 245065 |||||| || ||||||||||||||||| | |||||| || | || | | ||| || Sbjct 909665 CATGAACAGATCGGGGATCCAGAGGGCGTAGAAGAGATCTCGTGCTCGAACTTCTTCTTT 909606 Query 245066 TCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCC 245125 ||| | |||||| || || || | ||||| ||||||||| ||||||| ||||| Sbjct 909605 ACCGTG-----GTTCTTTCTTAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCATGGCTCG 909551 Query 245126 ATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAG 245184 | ||||| |||| || || || ||||||||||| |||||||| || ||| || | Sbjct 909550 AGGTAGATGGCGAACGCACCAGGTCGCTTGTTGCCACCCTGGTCGACATATCGGGCCGTG 909491 Query 245185 CGCGTTGAAGATGCGC--AGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTG 245242 |||| | |||| | || | || || || ||||| |||| |||||||| || Sbjct 909490 -GCGTCG--TATGCCCTTAGCATTGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCA 909434 Query 245243 ATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA---TGGACATGCCTAGTCCGCCGGCGTGC 245299 ||||||| |||||| | | || |||| ||| |||| | || | || ||||| | Sbjct 909433 ATGTAGGAACCCTTGGCTCGGATGTTG-TGAATGTGGAGA--CCGATACCACCGGCAGTC 909377 Query 245300 TTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACT-T 245358 |||||||| |||||||| |||||| || || || || || || || || || Sbjct 909376 TTGGAGATCTGGGCGCAGGTCTTGAGCGTCTCGTAGATACCGTCGATCGAGT-CGTCTCG 909318 Query 245359 CATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGT 245418 |||| || || || || ||||||| ||||| ||||| | | ||||||||||| || Sbjct 909317 CATGGCGACGAGGAAACACGAGGACATTTGGGGGTTGGGTGTACCCGAGTTGAACAATGT 909258 Query 245419 GGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGT 245477 || ||||||||||||||| | |||| || | || ||| |||| ||| | || Sbjct 909257 TGGCGAGGCGTGGGTAAAGTATC-GCTCGGACATGAGGTTGTAGGTCTCGAGGACTCGGT 909199 Query 245478 CGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCGT--CT 245534 | |||||| | |||||||| | |||| | ||| | ||||||| || ||| Sbjct 909198 CAATGTTGGCACCGTGGATACCGACGGCGACACGCATAATCATGTGCTGAGGTCGTTCGA 909139 Query 245535 CGATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGT 245594 |||| || | | || | ||| |||||| ||||| || |||||||| || || Sbjct 909138 CGATCTTGCCGTTGATTCTCAAGAG---GTAGGACCGCTCTAGGGTCTTGAAACCGAAAA 909082 Query 245595 ACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAG 245637 | |||| ||||||| || || ||| ||| | |||||| Sbjct 909081 AGTTGTAGGCAAAGTCTCGGTCGTAGATGATGGCAGAGTCGAG 909039 >seq7 Length=1004146 Score = 289 bits (320), Expect = 5e-73 Identities = 395/539 (73%), Gaps = 13/539 (2%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||| |||| || || || || ||||||||| |||| ||||| ||||||| ||||| Sbjct 957268 CTGTTCGAGGCTATCGACACCATCCCCTGCATCCAGAAAAAGGCCAACTGGGCCCTCAAG 957209 Query 42669 TGGATCGAG-AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 |||||| | | |||| | || |||| ||| | ||| | |||||| |||||||||| Sbjct 957208 TGGATCTCGGACGACCGAT-CGACTTTCGCTGAGCGACTGATCGCCTTTGCCGCCGTCGA 957150 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGA 42786 ||| ||||||||||| || | |||||||| ||||||||| | ||| || |||| || | Sbjct 957149 GGGTATCTTCTTCTCTGGTTCTTTCGCCTCGATCTTCTGGTTGAAGAAGCGAGGTCTC-A 957091 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 ||||||||||||||||||||||||| | ||| ||||||||||| || || | |||| Sbjct 957090 TGCCCGGACTCACCTTCTCGAACGAGTTGATCTCGAGGGACGAGGGTCTCCACACCGACT 957031 Query 42847 TTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC-ACAAGCCCTCGAAGGAGCGGGTCCGG 42905 ||||||| ||||| ||| | ||||||| | | || | ||| | | || ||| | Sbjct 957030 TTGCCTGTCTCCTCTTC---ACCCACCTCCGACGACGACCCCACCCA-GACACTGTCGAG 956975 Query 42906 GCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 ||||||| |||||||| |||||||| | ||||||||||| | | ||||| || Sbjct 956974 AGGATCATCAAAGAGGCCGTCAAGATCGAGCAAGAGTTCCTCACCGACGCTCTGCCAGTC 956915 Query 42966 TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCAT 43025 || || | || |||||| | ||||||||| |||||||| ||| |||||||||| Sbjct 956914 TCGCTCATTGGAATGAACTCTAAGCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGA 956855 Query 43026 CT-CCTGT-GCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTA 43083 || | ||| ||| | ||| | | | | ||| | | |||||||||||||| Sbjct 956854 CTGCTTGTCGCC--CTTGGTAACGACAAGGTGTGGAACGTGTCCAACCCCTTCGACTTTA 956797 Query 43084 TGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 |||||| |||||| | |||||||| ||||||| |||||| | | || ||| |||| Sbjct 956796 TGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTCGAGTCGAGAGTGTCCGCCTAC 956738 >seq1 Length=8012737 Score = 111 bits (122), Expect = 3e-19 Identities = 115/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 42697 GCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCT 42756 ||| ||| ||||| || || | ||||||||| ||||||||||| ||| |||| ||| Sbjct 7388787 GCGTGAGACTGGTTGCTTTCGCTTGCGTCGAGGGAATCTTCTTCTCTGGCTCCTTTGCCG 7388728 Query 42757 CCATCTTCTGGCTCAAGCAGAAGGTGTCG-ATGCCCGGACTCACCTTCTCGAACGAACTC 42815 ||||||||||| | ||| ||| || ||| |||||||| || || ||||| || || | Sbjct 7388727 CCATCTTCTGGTTGAAGAAGAGGG-GTCTCATGCCCGGCCTGACTTTCTCCAATGAGTTG 7388669 Query 42816 ATCAGCAGGGACGAGGGGCTGCATAGGG 42843 ||||||||||||||||| ||||| || Sbjct 7388668 ATCAGCAGGGACGAGGGAACGCATACGG 7388641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339105566080