Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7 132 5e-26 seq1 96.9 4e-15 >seq7 Length=1004146 Score = 132 bits (146), Expect = 5e-26 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||||| |||| ||||| || |||||| || || ||||| || | Sbjct 973667 ACCACCTCGCAGACGCAGAACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 973608 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| | |||| || ||||| || || ||||| ||||||||||||||||| | ||| Sbjct 973607 CAGAGTTCTGCCGTCCTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGGTCAGGTGG 973548 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | || |||||||||| ||| | || | |||| ||| | | | ||||| ||||| Sbjct 973547 TATGCCCTCCTTGTCC-TGAATCTTGCTCTTGA-CGTTGTCGATGGTGTCCGAAGATTCG 973490 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || |||| |||||| || || || || |||||||| || ||||| |||||| Sbjct 973489 ACCTCGAGCGTGATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCATT 973439 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| ||||| | || | ||||| || | || |||||| || || ||||| || Sbjct 974231 GACCACCTCTGAGTCGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGC 974172 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 ||| || || |||| || |||||||| |||||||| ||||| || |||||||||| || Sbjct 974171 TCAGGGTTCGACCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCGGGTG 974112 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | | |||||||||| ||| || ||||| | | | |||||| || || | Sbjct 974111 GGATACCCTCCTTGTCCTGGATCTTCGATTTGACATTGTCGATCGTGTCAGAGGACTCGA 974052 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAG 42187 | || | ||||||||||||||| || || Sbjct 974051 CCTCCAGCGTGATGGTTTTGCCGGTGAG 974024 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 42031 TGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCT 42090 |||| || | || || || |||| || |||||||| || ||||| || | |||||||| Sbjct 973052 TGTAGTCCGAGAGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCT 972993 Query 42091 GGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGC 42150 |||| | || | | |||||||||| ||| || |||| | | | ||||| Sbjct 972992 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCCG 972933 Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || |||| |||||||||||||| || || ||||| |||||||| ||||| Sbjct 972932 AAGACTCGACCTCGAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 972875 >seq1 Length=8012737 Score = 96.9 bits (106), Expect = 4e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | |||||| || | || || || || ||||| ||||| Sbjct 2303498 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGACCATCCTCGAGTTGTTTACCGGCGAA 2303557 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||||||||||||| | ||| | | |||||||||| ||| || |||| ||| Sbjct 2303558 GATGAGTCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 2303616 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 42187 | | | ||||| || || || || | ||||||||||||||||| || Sbjct 2303617 TGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTTTTGCCCGTGAG 2303668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212745678720