Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7 132 5e-26 seq1 93.3 4e-14 >seq7 Length=1004146 Score = 132 bits (146), Expect = 5e-26 Identities = 327/491 (67%), Gaps = 9/491 (2%) Strand=Plus/Minus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400 |||||||| | ||||| | ||||||||| | |||| | || | || ||||| Sbjct 957232 AAAAAGGCCAACTGGGCCCTCAAGTGGATCTCGGACGACCGATCGACTTTCGCTGAGCGA 957173 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 || | ||||| ||| |||||||| | || || || || || ||| | ||||| Sbjct 957172 CTGATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCTGGTTCTTTCGCCTCGATCTTC 957113 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | || | | ||| | |||||||| || || ||| ||||||||||| ||| | Sbjct 957112 TGGTTGAAGAAGCGAGGTCTCATGCCCGGACTCACCTTCTCGAACGAGTTGATCTCGAGG 957053 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAA- 52579 ||||| || || ||||| |||||||| || ||| || || | | | | |||| | Sbjct 957052 GACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTCA---CCCACCT--CCGACGAC 956998 Query 52580 -ATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGT 52638 | | | ||||| || ||| || |||| ||||| || ||||| | |||| Sbjct 956997 GACCCCACCCAGACACTGTCGAGAGGATCATCAAAGAGGCCGTCAAGATCGAGCAAGAGT 956938 Query 52639 TTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGT 52698 | | || | ||| ||||| ||| ||| | || |||||| | || ||||||| ||| Sbjct 956937 TCCTCACCGACGCTCTGCCAGTCTCGCTCATTGGAATGAACTCTAAGCTCATGTGCCAGT 956878 Query 52699 ACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA-GCCAAAGTACTTCAAC 52757 ||||||||||||| || || || ||| | || || || | | ||| || | ||| Sbjct 956877 ACATCGAGTTTGTCGCCGACCGACTGCTTGTCGCCCTTGGTAACGACAAGGT-GTGGAAC 956819 Query 52758 GCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTC 52817 | ||| || || || |||||| | | || ||||| |||||||| ||||||| ||| Sbjct 956818 GTGTCCAACCCCTTCGACTTTATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTC 956759 Query 52818 GAGAAGCGAGT 52828 ||| | |||| Sbjct 956758 GAGTCGAGAGT 956748 Score = 120 bits (132), Expect = 3e-22 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| ||| | || | | | |||||||| || |||||||||||| | Sbjct 973666 CCACCTCGCAGACGCAGAACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 973607 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||||||||| ||||| |||| |||| || ||||| ||||| || ||| Sbjct 973606 AGAGTTCTGCCGTCCTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGT 973547 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | |||||| | || || | Sbjct 973546 ATGCCCTCCTTGTC-CTGAATCTTGCTCTTGACGTTG-TCGATGGTGTCCGAAGATTCGA 973489 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | ||| || || || || || || || || |||||||| Sbjct 973488 CCTCGAGCGTGATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCAT 973440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || || | Sbjct 974196 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGACCGTCCTCCAGCTGCTTTCCAGCG 974137 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||| || ||||| || || ||||| || ||||| ||| || ||| | | Sbjct 974136 AAGATGAGACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTCGATTTGACA 974077 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGA 138594 ||| || | ||||| | ||||| ||||| | ||| | ||||| || || ||| Sbjct 974076 TTG-TCGATCGTGTCAGAGGACTCGACCTCCAGCGTGATGGTTTTGCCGGTGAGA 974023 >seq1 Length=8012737 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | || | || | | | |||||||| || |||||||||||| | Sbjct 2303463 CCACCTCTCAATCGAAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 2303522 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||||||||||||| |||| || ||||| ||||| || || Sbjct 2303523 AGAGTTCGACCATCCTCGAGTTGTTTACCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGG 2303582 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | |||||| | ||||| ||| Sbjct 2303583 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 2303642 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAG 138593 || | || | ||||| || || || Sbjct 2303643 TCAAGGGTGATGGTTTTGCCCGTGAG 2303668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262350373760