Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5 210 3e-49 seq7 127 3e-24 seq1 113 6e-20 >seq5 Length=1773785 Score = 210 bits (232), Expect = 3e-49 Identities = 833/1299 (64%), Gaps = 29/1299 (2%) Strand=Plus/Minus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 ||||||| || || || || | || || || |||||||||||| | ||||| || Sbjct 910365 CCCACATGTCGAATTGCAGCTTGCCCTGCGAGATTGGCGATCCCTCGTACGTCTCGTACT 910306 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 ||| || ||| |||| ||| | || ||||| || ||||| || || ||||| | Sbjct 910305 TGCCGTCCTTCTCAGCCATCTCGCACGAGGCTTCGAGTGCGGCGTGGTAGATGGTCTCGA 910246 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAA--TCAAACGCGAGACGGCACAAAAT 116240 | || || || | || | | | |||| ||||| | || ||| || Sbjct 910245 AGATCTGAATGTTGA--GCTCTCGAGCGGCCGGAGAGTCAAAGGGCAGTCGGAGAGCCAT 910188 Query 116241 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 116300 || | || |||||||||||||||||||| || | || | |||| ||| || ||| | Sbjct 910187 GAACGCGTCGGCGAGACCTTGGACACCGAGTCCGACGGGTCTGTGTCGCATGTTGGACGT 910128 Query 116301 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 116360 | || | ||||| || | || | | ||| ||| | || || |||||||| Sbjct 910127 TTTGGCCTCTTTGACGGGGTAGTAGTTTCGAGAGATGACCTGGTCGAGGTTCTTGGTGAC 910068 Query 116361 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT--GACA 116418 || || ||||| || |||||||| | | | || | ||| || | ||| |||| Sbjct 910067 GACTTTGGTGATCTCGTGAAGCTTCTTGAAGTCGTAGACGCG--TCGTTCCATGTCGACA 910010 Query 116419 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 116478 || || || |||| || || || || || || | | ||| || || |||| Sbjct 910009 AACGCGGGGAGTGCGAGGGAAGCGAGGTTGCAGACGGCGACCTCGTCGGGGGAAGAGTAC 909950 Query 116479 TCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 116538 || || || || || |||| || || ||| || ||||| | || | || || ||| Sbjct 909949 TCGATGATCTCAGTGCACAGGTTGGAGGACTTGATCGTGCCGAGGTGTTGCTGGTTAGAC 909890 Query 116539 TTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTG 116598 || | ||| || || ||||||||||| ||||| || || ||||| || |||| || | Sbjct 909889 TTGGCGTTGGCGGCGTCTTTGTAGAGCATGTATGGGGTACCAGTCTCGGTCTGGGCCTCG 909830 Query 116599 AGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTC--- 116654 ||||| || ||| | | | ||| | | ||| || ||| |||| | Sbjct 909829 AGAATGGCGAACCAGAGCTTTTGCGCTTTGA----TGGTCTT---TCGTCCCTTTCCAGC 909777 Query 116655 ---CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGG 116711 |||||| |||||| |||||||| | | | || | ||| || || Sbjct 909776 ACGCTCGTAGCCCTCGTAGAGCTTTTCAAACTCGGCGCTGTGGACATCGGCGAGGCCGGG 909717 Query 116712 TGCCTTATCTGGA-CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770 || || || || | ||| | ||| | |||| || ||| || ||||||||||| | Sbjct 909716 -GCATTCGGAGGGGCACATGAGGGTCCAGTCACCATCCGACTCGACTCGCTTCATGAACA 909658 Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830 | || ||||||||||| || |||||||||| || ||| ||||||| | || || | Sbjct 909657 GATCGGGGATCCAGAGGGCGTAGAAGAGATCTCGTGCTCGAACTTCTTCTTTACCGTGGT 909598 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | | | || | ||||| | || || |||||||| || || ||||| | |||| Sbjct 909597 TCTTTCTTAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGA 909538 Query 116891 TTGACCCC--TTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACG 116946 | || | || | | ||| |||||| ||||| | ||||| |||| || | Sbjct 909537 ACGCACCAGGTCGCTTGTTG-CCACCCTGGTCGACATATCGGGCCGTGGCGTCGTATGCC 909479 Query 116947 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTG 117006 | |||||||||| |||||| | || | || || || || ||| || ||| Sbjct 909478 CTTAGCATTGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTAGGAACCCTTG 909419 Query 117007 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC 117066 |||| || | ||| ||||| | ||| ||||| || || ||| ||||| || ||||| Sbjct 909418 GCTCGGATGTTGTGAATGTGGAGACCGATACCACCGGCAGTCTTGGAGATCTGGGCGCAG 909359 Query 117067 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 117126 | |||| | ||||||| || ||||||||||| | | |||| |||||| || Sbjct 909358 GTCTTGAGCGTCTCGTAGATACCGTCGATCGAGTCGTCTCGCATGGCGACGAGGAAACAC 909299 Query 117127 CTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 |||||||| || | |||||||| | |||||| | ||||| | |||||| | || Sbjct 909298 GAGGACATTTGGGGGTTGGGTGTACCCGAGTTGAACAATGTTGGCGAGGCGTGGGTAAAG 909239 Query 117187 ATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATA 117246 | | |||||| | ||||||||| | ||| | ||||| | ||||| ||| Sbjct 909238 TATCGCTCGGACATGAGGTTGTAGGTCTCGAGGACTCGGTCAATGTTGGCACCGTGGATA 909179 Query 117247 CCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTC 117306 |||| | ||| ||||||| ||||| || ||| ||| | | | || | || ||| Sbjct 909178 CCGACGGCGACACGCATAATCATGTGCTGAGGTCGTTCGACGATCTTGCCGTTGATTCTC 909119 Query 117307 TGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAG 117345 |||||| | ||| | |||||||| ||| ||| || Sbjct 909118 AAGAGGTAGGACCGCTCTAGGGTCTTGAAACCGAAAAAG 909080 >seq7 Length=1004146 Score = 127 bits (140), Expect = 3e-24 Identities = 178/246 (72%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||||||||||||||| | ||||| | || ||||||||| || || Sbjct 957027 GCAAAGTCGGTGTGGAGACCCTCGTCCCTCGAGATCAACTCGTTCGAGAAGGTGAGTCCG 957086 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| ||||||||||||||||| |||| || || |||||||||||||| Sbjct 957087 GGCATGAGACCTCGCTTCTTCAACCAGAAGATCGAGGCGAAAGAACCAGAGAAGAAGATA 957146 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGC-AAAG--GAGCGGGACTTTGTATCA 127696 ||||| || || || || | || ||||| || |||| || ||| | || | Sbjct 957147 CCCTCGACGGCGGCAAAGGCGATCAGTCGCTCAGCGAAAGTCGATCGG----TCGTCCGA 957202 Query 127697 -AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 | |||||| | ||||| | |||||||||| ||| || |||| ||| | ||| || || Sbjct 957203 GATCCACTTGAGGGCCCAGTTGGCCTTTTTCTGGATGCAGGGGATGGTGTCGATAGCCTC 957262 Query 127756 AAAGAG 127761 || || Sbjct 957263 GAACAG 957268 >seq1 Length=8012737 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| | | ||| | ||||| ||||| ||| || ||||||||||||| |||| Sbjct 7388652 CCCTCGTCCCTGCTGATCAACTCATTGGAGAAAGTCAGGCCGGGCATGAGACCCCTCTTC 7388711 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 ||||||||||| || || ||| ||||||||||||||||| ||||| || || ||||| Sbjct 7388712 TTCAACCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCGACGCAAGCGAAA 7388771 Query 127658 GCAAATAGACGCTCGGCAAAGG 127679 |||| || | | || ||||| Sbjct 7388772 GCAACCAGTCTCACGCGAAAGG 7388793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507138649280