Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7 145 9e-30 seq1 109 6e-19 >seq7 Length=1004146 Score = 145 bits (160), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||||| ||||| ||||| || |||||| ||||| ||||||||||| Sbjct 973666 CCACCTCGCAGACGCAGAACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 973607 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | |||| |||||||| ||||||||||| || | ||||||||||| | || Sbjct 973606 AGAGTTCTGCCGTCCTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGT 973547 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || |||||||||| ||||| |||||| ||| | | | ||||| ||||| || Sbjct 973546 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGA-CGTTGTCGATGGTGTCCGAAGATTCGAC 973488 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||| || || || || ||||| || || ||||| |||||| Sbjct 973487 CTCGAGCGTGATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCATT 973439 Score = 109 bits (120), Expect = 6e-19 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || || || || |||| || |||||||| |||||||| ||||| ||||||| Sbjct 973052 TGTAGTCCGAGAGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCT 972993 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535 |||| | || | | |||||||||| |||||| ||||| | | | ||||| Sbjct 972992 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCCG 972933 Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || | |||||||||||||| || || || || |||||||| ||||| Sbjct 972932 AAGACTCGACCTCGAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 972875 Score = 102 bits (112), Expect = 9e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || || || |||| || |||||||| || ||||| Sbjct 974194 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTTCGACCGTCCTCCAGCTGCTTTCCAGCGAA 974135 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||||| || | | |||||||||| ||||||| |||| | Sbjct 974134 GATGAGACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTCGATTTGACATT 974075 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | |||||| || || || |||| ||||||||||||||| || || Sbjct 974074 GTCGATCGTGTCAGAGGACTCGACCTCCAGCGTGATGGTTTTGCCGGTGAG 974024 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| | || || | || || ||||| || || ||||| Sbjct 973913 CTCCTTCTGGATGTTGTAGTCGGACAAGGTTCGTCCATCCTCAAGCTGTTTACCAGCGAA 973854 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| || |||||||| | || | || |||||||||| |||||| ||||| | Sbjct 973853 GATCAGTCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATT 973794 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | ||||| || ||||| |||| |||||||| || || |||| Sbjct 973793 GTCAATGGTGTCCGAAGACTCCACCTCCAGGGTGATGGTCTTTCCTGTCA 973744 >seq1 Length=8012737 Score = 109 bits (120), Expect = 6e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || || | || || || | ||| |||||| ||||| ||||||||||| Sbjct 2303463 CCACCTCTCAATCGAAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 2303522 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || ||||| || || |||||||| || | ||||||||||| | || Sbjct 2303523 AGAGTTCGACCATCCTCGAGTTGTTTACCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGG 2303582 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | | |||||||||| |||||| ||||| ||| | | | ||||| || || || Sbjct 2303583 ATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCCGAAGACTCGAC 2303641 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAG 46572 || | ||||||||||||||||| || Sbjct 2303642 CTCAAGGGTGATGGTTTTGCCCGTGAG 2303668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238343476160