Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 125 7e-24 seq1 109 5e-19 >seq7 Length=1004146 Score = 125 bits (138), Expect = 7e-24 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || |||||||| || || || ||||| |||| ||||| | | Sbjct 973439 AATGCAGATCTTCGTCAAGACGCTCACCGGAAAGACGATCACGCTCGAGGTCGAATCTTC 973498 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | | |||| | |||| || || | ||||| ||||| || || | ||| Sbjct 973499 GGACACCATCGACAACG--TCAAGAGCAAGATTCAGGACAAGGAGGGCATACCACCTGAC 973556 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | ||| ||||||||||| || |||| | || || ||||||| Sbjct 973557 CAGCAGCGACTCATCTTCGCCGGCAAACAGCTCGAGGACGGCAGAACTCTGTCCGACTAC 973616 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| |||| |||| |||| |||||| || |||| || Sbjct 973617 AACATCCAGAAGGAGTCGACCTTGCACCTGGTTCTGCGTCTGCGAGGTGG 973666 Score = 123 bits (136), Expect = 2e-23 Identities = 288/429 (67%), Gaps = 4/429 (1%) Strand=Plus/Plus Query 132712 AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATT 132770 ||| |||| ||||| | |||||| || ||||||||||| || ||||| | || | | || Sbjct 956841 AGGGCGACAAGCAGTCGGTCGGCGACAAACTCGATGTACTGGCACATGAGCTTAG-AGTT 956899 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | ||| | || || ||||| || |||||||| || ||||||||| ||| || Sbjct 956900 CATTCCAATGAGCGAGACTGGCAGAGCGTCGGTGAGGAACTCTTGCTCGATCTTGACGGC 956959 Query 132831 GTCGGTGACGATT-TCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACA 132889 || ||| ||| || | | | | | | | || ||| | | || |||| | Sbjct 956960 CTCTTTGATGATCCTCTCGACAGTGT-CTGGGTGGGGTCGTCGTCGGAGGTGGGTGAAGA 957018 Query 132890 TCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAG 132949 | || ||||||||| || | ||||||||||| || || | ||||| ||| | Sbjct 957019 GGAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCCCTCGAGATCAACTCGTTCGAGAAGG 957078 Query 132950 TCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAA 133009 | | ||||||||||| || || || || | ||| || || | ||||||| || || | Sbjct 957079 TGAGTCCGGGCATGAGACCTCGCTTCTTCAACCAGAAGATCGAGGCGAAAGAACCAGAGA 957138 Query 133010 AGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGC 133069 |||||| ||||||||||| || || || | ||| ||||| |||| || | | | | Sbjct 957139 AGAAGATACCCTCGACGGCGGCAAAGGCGATCAGTCGCTCAGCGAAAGTCGATCGGTCGT 957198 Query 133070 TGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGG 133129 | |||||| || ||||| | |||||||| | || ||| || || || ||||| | Sbjct 957199 CCGAGATCCACTTGAGGGCCCAGTTGGCCTTTTTCTGGATGCAGGGGATGGTGTCGATAG 957258 Query 133130 CGTTCAACA 133138 | | |||| Sbjct 957259 CCTCGAACA 957267 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 ||||| |||||||||||||| | || |||||| || | |||| | | | | ||| Sbjct 974024 CTCACCGGCAAAACCATCACGCTGGAGGTCGAGTCCTCTGACACGATCGACAATGTCAAA 974083 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| ||||| ||||| || || ||||||| || || ||||| | ||| || Sbjct 974084 TCGAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAGCAACGTCTCATCTTCGCTGGA 974143 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || |||||||| |||| || ||||| | ||||||||||||||| ||||| |||| || Sbjct 974144 AAGCAGCTGGAGGACGGTCGAACCCTGAGCGACTACAACATCCAGAAGGAGTCGACTCTT 974203 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| || || | ||||| || Sbjct 974204 CACTTGGTCCTCCGACTCAGAGGTGG 974229 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||||||||||||| |||| |||||| | | Sbjct 972875 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAAACCATCACCCTCGAGGTCGAGTCTTCG 972934 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| ||||| || || | ||||| Sbjct 972935 GACACAATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 972994 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||| | || | ||| || || |||||||| |||| || |||||| ||||||| Sbjct 972995 CAGCGATTGATCTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTCTCGGACTACA 973052 >seq1 Length=8012737 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||||||||||||||||||| | || |||||| | | |||| | | | |||| | || Sbjct 2303668 CTCACGGGCAAAACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGACAACG-TCAA 2303610 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || |||| ||||| ||||| || || | ||||| ||||| ||||| | ||| || Sbjct 2303609 GTCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAGCAGCGACTCATCTTCGCCGG 2303550 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||||| || || || | || || || ||||||||||||||| ||||| | || || Sbjct 2303549 TAAACAACTCGAGGATGGTCGAACTCTGTCCGACTACAACATCCAGAAGGAGTCTACCCT 2303490 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || || |||||||| || Sbjct 2303489 CCACCTCGTCCTTCGATTGAGAGGTGG 2303463 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 |||||||||||| || | || ||| |||||||| |||||||||||| || | || Sbjct 7388652 CCCTCGTCCCTGCTGATCAACTCATTGGAGAAAGTCAGGCCGGGCATGAGACCCCTCTTC 7388711 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035 || | ||| || |||||||| || ||| || ||||||| ||||||||| |||||| Sbjct 7388712 TTCAACCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCGACGCAAGCGAAA 7388771 Query 133036 GCCACCAGGCGCTCGC 133051 || ||||| | | ||| Sbjct 7388772 GCAACCAGTCTCACGC 7388787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172749982720