Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 203 4e-47 seq7 122 1e-22 seq1 82.4 9e-11 >seq5 Length=1773785 Score = 203 bits (224), Expect = 4e-47 Identities = 718/1109 (65%), Gaps = 27/1109 (2%) Strand=Plus/Minus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || ||||||||||| ||||| | || | |||||||||||||| || ||| || || Sbjct 910180 TCGGCGAGACCTTGGACACCGAGTCCGACGGGTCTGTGTCGCATGTTGGACGTTTTGGCC 910121 Query 106340 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 106399 | ||||| || | |||| ||||| ||| || || ||||| || | || Sbjct 910120 TCTTTGACGGGGTAGTAGTTTCGAGAGATGACCTGGTCGAGGTTCTTGGTGACGACTTTG 910061 Query 106400 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT--GACATACTTTG 106457 ||||| || ||||| || | | || | ||| || | ||| |||| || | Sbjct 910060 GTGATCTCGTGAAGCTTCTTGAAGTCGTAGACGCG--TCGTTCCATGTCGACAAACGCGG 910003 Query 106458 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 106517 | || |||| || || | ||||| || || ||| || | |||||| | | Sbjct 910002 GGAGTGCGAGGGAAGCGAGGTTGCAGACGGCGACCTCGTCGGGGGAAGAGTACTCGATGA 909943 Query 106518 TTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGT 106577 | || || |||| |||||| ||| ||||| || | | | |||||| ||| || Sbjct 909942 TCTCAGTGCACAGGTTGGAGGACTTGATCGTGCCGAGGTGTTGCTGGTTAGACTTGGCGT 909883 Query 106578 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTG 106637 || || || |||||||||||||| || || || ||||| ||||| | || |||||| | Sbjct 909882 TGGCGGCGTCTTTGTAGAGCATGTATGGGGTACCAGTCTCGGTCTGGGCCTCGAGAATGG 909823 Query 106638 CCTTCCACA-CATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTCCGC-CTCGTAC 106693 | ||| | | | ||| | | |||| || | ||| | || | | |||||| Sbjct 909822 CGAACCAGAGCTTTTGCGCTTTG----ATGGTCTTTCGTCCCTTTCCAGCACGCTCGTAG 909767 Query 106694 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTC 106752 |||||| ||||||||| | | | |||| ||| || || || || | Sbjct 909766 CCCTCGTAGAGCTTTTCAAACTCGGCGCTGTGGACATCGGCGAGGCCGGG-GCATTCGGA 909708 Query 106753 TGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 106812 || || | || | ||| | |||| || ||| || ||||||||||| || || || || Sbjct 909707 GGGGCACATGAGGGTCCAGTCACCATCCGACTCGACTCGCTTCATGAACAGATCGGGGAT 909648 Query 106813 CCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872 ||| |||| | |||||||||| ||| | ||||| | ||| ||||| || || Sbjct 909647 CCAGAGGGCGTAGAAGAGATCTCGTGCTCGAACTTCTTCTTTACCGTGGTTCTTTCTTAG 909588 Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGA 106926 || ||||| || | || || |||||||||||||| || |||| |||| || Sbjct 909587 GTCGAGGAAGTCGAAGACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAACGCACCAGG 909528 Query 106927 TCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 106986 || ||| | | ||| | || | ||||| || || ||||||| || | | ||||| Sbjct 909527 TCGCTT--GTTG-CCACCCTGGTCGACATATCGGGCCGTGGCGTCGTATGCCCTTAGCAT 909471 Query 106987 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 107046 ||||| ||||| | || | ||| || || || ||| || ||||||| | Sbjct 909470 TGGAACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTAGGAACCCTTGGCTCGGAT 909411 Query 107047 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 107106 | || ||||| | || ||||| || || ||| ||||| || || || | | || Sbjct 909410 GTTGTGAATGTGGAGACCGATACCACCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAG 909351 Query 107107 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 107166 || | |||||||||| ||| ||||| || |||||| ||||| || |||||| Sbjct 909350 CGTCTCGTAGATACCGTCGATCGAGTCGTCTCGCATGGCGACGAGGAAACACGAGGACAT 909291 Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 || || | |||||||| | ||||| | ||||| | ||||| | || | | Sbjct 909290 TTGGGGGTTGGGTGTACCCGAGTTGAACAATGTTGGCGAGGCGTGGGTAAAGTATCGCTC 909231 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| || ||| ||||| | ||| ||||||| | |||||||| |||| ||| Sbjct 909230 GGACATGAGGTTGTAGGTCTCGAGGACTCGGTCAATGTTGGCACCGTGGATACCGACGGC 909171 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344 |||||||||| ||||| || ||| ||| | || |||| | || | | |||| Sbjct 909170 GACACGCATAATCATGTGCTGAGGTCGTTCGACGATCTTGCCGTTGATTC--TCAAGAGG 909113 Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAA 107373 ||| | ||| ||||| |||| ||| || Sbjct 909112 TAGGACCGCTCTAGGGTCTTGAAACCGAA 909084 >seq7 Length=1004146 Score = 122 bits (134), Expect = 1e-22 Identities = 219/320 (68%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 117112 ACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGT 117171 ||| |||| ||||||| | |||| || ||||||||| || ||||| ||| || Sbjct 956865 ACAAACTCGATGTACTGGCACATGAGCTTAGAGTTCATTCCAATGAGCGAGACTGGCAGA 956924 Query 117172 GCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTT 117231 ||||| || |||| ||| ||| |||| || |||||||| | ||| | || ||| Sbjct 956925 GCGTCGGTGAGGAACTCTTGCTCGATCTTGACGGCCTCTTTGATGATCCTCTCGACAGTG 956984 Query 117232 TCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGA 117291 || | ||||| || | ||||||| |||||| || ||||||| Sbjct 956985 TCTGGGTGGGGTCGTCGTCGGAGGTGGGTGAAGAGGAGACAGGCAAAGTCGGTGTGGAGA 957044 Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| || | || || | || || |||||| || || ||||||||||| |||||| Sbjct 957045 CCCTCGTCCCTCGAGATCAACTCGTTCGAGAAGGTGAGTCCGGGCATGAGACCTCGCTTC 957104 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 |||||||| | || | | ||| || || ||||||||||||||||| || ||||| Sbjct 957105 TTCAACCAGAAGATCGAGGCGAAAGAACCAGAGAAGAAGATACCCTCGACGGCGGCAAAG 957164 Query 117412 GCAAAAAGGCGCTCGGCGAA 117431 || | || ||||| ||||| Sbjct 957165 GCGATCAGTCGCTCAGCGAA 957184 >seq1 Length=8012737 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 117313 TCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAG 117372 ||||| ||||| ||||| ||||||||||||| |||||||||||| | || ||| Sbjct 7388673 TCATTGGAGAAAGTCAGGCCGGGCATGAGACCCCTCTTCTTCAACCAGAAGATGGCGGCA 7388732 Query 117373 AATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGCAA 117415 || || || ||||||||||| ||||| || || || || |||| Sbjct 7388733 AAGGAGCCAGAGAAGAAGATTCCCTCGACGCAAGCGAAAGCAA 7388775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980741001920