Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7 158 1e-32 seq5 149 8e-30 seq1 95.1 1e-13 >seq7 Length=1004146 Score = 158 bits (174), Expect = 1e-32 Identities = 216/295 (73%), Gaps = 5/295 (2%) Strand=Plus/Plus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||| ||||||| |||||||| ||||||||||| |||||| | ||| ||||||| Sbjct 956756 CTCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGA 956815 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 | || | ||| ||| || || | | ||||| |||||||||||||||||||| Sbjct 956816 CACGTTCCACACCTTGTCGTTACCAAGGGCGACAAGCAGTCGGTCGGCGACAAACTCGAT 956875 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCAC 868896 ||||||||||||||| | |||||| || ||||||| || ||||| | ||| | | Sbjct 956876 GTACTGGCACATGAGCTTAGAGTTCATTCCAATGAGCGAGACTGGCAGAGCGTCGGTGAG 956935 Query 868897 AAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTGGGCAC-GTCGGCCGAGG 868955 ||||||| |||||||| ||||||||| ||||||| | | | || ||| | | || Sbjct 956936 GAACTCTTGCTCGATCTTGACGGCCTCTTTGATGATCCTC-TCGACAGTGTCTGG-GTGG 956993 Query 868956 GCTTGTTGACG-AGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGCA-ACCCT 869008 | | || | || || ||| |||| || |||||||||||| ||| | ||||| Sbjct 956994 GGTCGTCGTCGGAGGTGGGTGAAGAGGAGACAGGCAAAGTCGGTGTGGAGACCCT 957048 Score = 145 bits (160), Expect = 9e-29 Identities = 199/273 (73%), Gaps = 9/273 (3%) Strand=Plus/Plus Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253 ||||| ||||| |||| ||| ||||||||||| || |||||||| | ||| ||||| Sbjct 957059 GATCAACTCGTTCGAGAAGGTGAGTCCGGGCATGAGACCTCGCTTCTTCAACCAGAAGAT 957118 Query 869254 GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTC 869313 | | |||| || ||||| ||||| |||||||||||||||||| |||| || ||||| Sbjct 957119 CGAGGCGAAAGAACCAGAGAAGAAGATACCCTCGACGGCGGCAAAGGCGATCAGTCGCTC 957178 Query 869314 GGCAAAGGTGTCGA--GGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 || || ||||| || | ||| ||||||||| | ||||||| |||||||||| Sbjct 957179 AGCGAA--AGTCGATCGGTCGTCC---GAGATCCACTTGAGGGCCCAGTTGGCCTTTTTC 957233 Query 869372 CTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGG-GTCCTT 869430 | | || | |||||||| || || |||| | | |||| ||| |||||| Sbjct 957234 TGGATGCAGGGGATGGTGTCGATAGCCTCGAACAGGT-ATGTTCGTCGGGCGGCGTCCTT 957292 Query 869431 GACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || || |||||||| ||||| || |||||||| Sbjct 957293 GATGTATGTGTCGATGAGGAGAGAGTAGGTCTC 957325 >seq5 Length=1773785 Score = 149 bits (164), Expect = 8e-30 Identities = 326/490 (67%), Gaps = 15/490 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| || || |||||| ||| | | | ||||| || |||| |||||||| Sbjct 909512 CTGGTCGACATATCGGGCCGTGGCGTCGTATGCCCTTAGCATTGGAACGATACCGTTGGA 909453 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||||| || || | ||||| || ||| || | ||||| | | || Sbjct 909452 GTAACCGTTGGTACCGGCAATGTAGGAACCCTTGGCTCGGATGTTGTGAATGTGGAGACC 909393 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || ||||| | ||||||||| | ||||| |||||||| |||||||| || || Sbjct 909392 GATACCACCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGCGTCTCGTAGATACCGTC 909333 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 |||||||||| | |||| | ||||| || ||||| || |||| |||| | || || Sbjct 909332 GATCGAGTCGTCTCGCATGGCGACGAGGAAACACGAGGACATTTGGGGGTTGGGTGTACC 909273 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 | |||||| | || |||| || ||| || | || |||||| || |||||| Sbjct 909272 CGAGTTGAACAATGTTGGCGAGGCGTGGGTAAAGTATCGCTCGGACATGAGGTTGTAGGT 909213 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 |||| || || ||| | || |||| || | | |||| |||||| Sbjct 909212 CTCGAGGACTCG------------GTCAATGTTGGCA---CCGTGGATACCGACGGCGAC 909168 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||| | ||||| ||| || || ||||||| |||| | | |||||||| Sbjct 909167 ACGCATAATCATGTGCTGAGGTCGTTCGACGATCTTGCCGTTGATTCTCAAGAGGTAGGA 909108 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 ||| | |||| ||| || || || ||||||| || ||||||| | |||||| Sbjct 909107 CCGCTCTAGGGTCTTGAAACCGAAAAAGTTGTAGGCAAAGTCTCGGTCGTAGATGATGGC 909048 Query 1630545 GGCGTCGAGG 1630554 | ||||||| Sbjct 909047 AGAGTCGAGG 909038 Score = 113 bits (124), Expect = 6e-19 Identities = 321/502 (64%), Gaps = 0/502 (0%) Strand=Plus/Minus Query 1628099 CGACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACG 1628158 |||||||| ||| || || | | | |||||||| || || || ||| || | Sbjct 910014 CGACAAACGCGGGGAGTGCGAGGGAAGCGAGGTTGCAGACGGCGACCTCGTCGGGGGAAG 909955 Query 1628159 AAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGT 1628218 | ||| || |||||| ||||||||||||| ||| | |||| || |||| ||||||| Sbjct 909954 AGTACTCGATGATCTCAGTGCACAGGTTGGAGGACTTGATCGTGCCGAGGTGTTGCTGGT 909895 Query 1628219 TGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCG 1628278 | | | |||| ||||||| |||| ||||||||| || | || |||||| |||| | Sbjct 909894 TAGACTTGGCGTTGGCGGCGTCTTTGTAGAGCATGTATGGGGTACCAGTCTCGGTCTGGG 909835 Query 1628279 CCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNN 1628338 || ||| ||||| |||||| || |||| | | | || | || Sbjct 909834 CCTCGAGAATGGCGAACCAGAGCTTTTGCGCTTTGATGGTCTTTCGTCCCTTTCCAGCAC 909775 Query 1628339 NNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCG 1628398 ||||| | |||| || | ||| |||||||| Sbjct 909774 GCTCGTAGCCCTCGTAGAGCTTTTCAAACTCGGCGCTGTGGACATCGGCGAGGCCGGGGC 909715 Query 1628399 CCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGT 1628458 ||||| || || | ||| | |||||| ||| | | | | | || ||| || || | Sbjct 909714 ATTCGGAGGGGCACATGAGGGTCCAGTCACCATCCGACTCGACTCGCTTCATGAACAGAT 909655 Query 1628459 CACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCT 1628518 | |||| || ||||| ||||| || || || || || || || |||||||||| Sbjct 909654 CGGGGATCCAGAGGGCGTAGAAGAGATCTCGTGCTCGAACTTCTTCTTTACCGTGGTTCT 909595 Query 1628519 TTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGG 1628578 || | |||||||| |||||| | |||||||||||| ||||| |||||| ||| || | Sbjct 909594 TTCTTAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGAACG 909535 Query 1628579 CGCCCTTGCGCTTGCCGCCGCC 1628600 | || |||||| ||| || Sbjct 909534 CACCAGGTCGCTTGTTGCCACC 909513 >seq1 Length=8012737 Score = 95.1 bits (104), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| |||||||||||||||||| | | ||||||||||||||| ||||| || Sbjct 7580262 CCGCGACCCTCGCACGCCGACTACACCTACCTCGTCAAGTACGGCATCAAAGCGTCTTCC 7580321 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 || || || || | || || || ||||| || || || ||||| ||||| | || Sbjct 7580322 GGGGGTGGTCGAGCCTCGGCACGAGAGACGATCGGACGTGTGGCCGCTGGCGCCATTGCT 7580381 Query 18478 GAGAA 18482 ||||| Sbjct 7580382 GAGAA 7580386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138543482536