Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7 156 7e-32 seq5 132 8e-25 seq4 98.7 2e-14 >seq7 Length=1004146 Score = 156 bits (172), Expect = 7e-32 Identities = 208/286 (73%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 794355 GATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 794414 |||||| ||||| ||| ||| ||||||||||| || |||||||| | ||| ||||| Sbjct 957059 GATCAACTCGTTCGAGAAGGTGAGTCCGGGCATGAGACCTCGCTTCTTCAACCAGAAGAT 957118 Query 794415 GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTC 794474 | |||| || ||||| ||||| |||||||||||||||||| ||| || ||||| Sbjct 957119 CGAGGCGAAAGAACCAGAGAAGAAGATACCCTCGACGGCGGCAAAGGCGATCAGTCGCTC 957178 Query 794475 GGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCT 794534 || ||||| | | || | ||||||||| | ||||| | ||||||||| Sbjct 957179 AGCGAAAGT---CGATCGGTCGTCCGAGATCCACTTGAGGGCCCAGTTGGCCTTTTTCTG 957235 Query 794535 CACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGA 794593 | |||| | |||||||| || || |||| || | || | | | |||||||| Sbjct 957236 GATGCAGGGGATGGTGTCGATAGCCTCGAACAGGTATGTTCGTC-GGGCGGCGTCCTTGA 957294 Query 794594 CGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 ||| |||||||||||||| ||||||||||| ||||||||||| || Sbjct 957295 TGTATGTGTCGATGAGGAGAGAGTAGGTCTCGGAGTGGATGTTCTC 957340 Score = 150 bits (166), Expect = 3e-30 Identities = 215/296 (73%), Gaps = 10/296 (3%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| ||||||| |||||||| ||||||||||| |||||| | ||| ||||||| Sbjct 956756 CTCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGA 956815 Query 793985 CGTCAGGT---AGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTC 794041 | | || | ||| ||| || || | ||||||| ||||||||||| || || Sbjct 956816 C---ACGTTCCACACCTTGTCGTTACCAAGGGCGACAAGCAGTCGGTCGGCGACAAACTC 956872 Query 794042 AATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCT 794101 ||||||||||||||||| | |||||| || ||||||| || ||||| | ||| | Sbjct 956873 GATGTACTGGCACATGAGCTTAGAGTTCATTCCAATGAGCGAGACTGGCAGAGCGTCGGT 956932 Query 794102 GACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCAC-GTCGGACG 794160 || ||||||| |||||||| ||||||||| |||||||| | | | || ||| | | Sbjct 956933 GAGGAACTCTTGCTCGATCTTGACGGCCTCTTTGATGATCCTC-TCGACAGTGTCTGG-G 956990 Query 794161 ACGGCTTGTCGACG-AGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 || | |||| || || ||| |||| || |||||||||||| || ||||| Sbjct 956991 TGGGGTCGTCGTCGGAGGTGGGTGAAGAGGAGACAGGCAAAGTCGGTGTGGAGACC 957046 >seq5 Length=1773785 Score = 132 bits (146), Expect = 8e-25 Identities = 296/445 (67%), Gaps = 12/445 (3%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTG- 2071632 ||| || || ||| ||||||||||||| ||| | | ||||| |||| |||||||| Sbjct 909951 ACTCGATGATCTCAGTGCACAGGTTGGAGGACTTGATCGTGCCGAGGTGTTGCTGGTTAG 909892 Query 2071633 -CTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691 || | | |||| ||||||| |||| |||||||| || | ||| |||||| |||| || Sbjct 909891 ACTTGGC--GTTGGCGGCGTCTTTGTAGAGCATGTATGGGGTACCAGTCTCGGTCTGGGC 909834 Query 2071692 CGTGACGATGGCCGACCAAA--TTTGGCGCGCGG--GCACCGAGGTCCTCGCGCGGCCCT 2071747 | || ||||| |||| | ||| |||| | | | |||| | || | Sbjct 909833 CTCGAGAATGGCGAACCAGAGCTTTTGCGCTTTGATGGTCTTTCGTCCCTTTCCAGCAC- 909775 Query 2071748 NNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGG 2071807 |||| ||||| |||||| |||| ||| ||||||| Sbjct 909774 ---GCTCGTAGCCCTCGTAGAGCTTTTCAAACTCGGCGCTGTGGACATCGGCGAGGCCGG 909718 Query 2071808 GCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACA 2071867 | ||||| ||||| | ||| | |||||| || | | | | || || ||| |||| Sbjct 909717 GGCATTCGGAGGGGCACATGAGGGTCCAGTCACCATCCGACTCGACTCGCTTCATGAACA 909658 Query 2071868 GGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGT 2071927 | ||| |||| ||| |||| |||||||| || || || || || || ||||||| Sbjct 909657 GATCGGGGATCCAGAGGGCGTAGAAGAGATCTCGTGCTCGAACTTCTTCTTTACCGTGGT 909598 Query 2071928 TCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAA 2071987 ||||| | |||||||| |||||| || |||||||||||| ||||| |||||| ||| | Sbjct 909597 TCTTTCTTAGGTCGAGGAAGTCGAAGACGTCGGCGTGCCATGGCTCGAGGTAGATGGCGA 909538 Query 2071988 AGGCGCCCTTGCGCTTGCCGCCGCC 2072012 | || || |||||| ||| || Sbjct 909537 ACGCACCAGGTCGCTTGTTGCCACC 909513 Score = 131 bits (144), Expect = 3e-24 Identities = 329/500 (66%), Gaps = 15/500 (3%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| || |||||| ||| | | | ||||| || || | |||||||| Sbjct 909512 CTGGTCGACATATCGGGCCGTGGCGTCGTATGCCCTTAGCATTGGAACGATACCGTTGGA 909453 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||||| || || | ||||| ||| ||| || | ||||| | | || Sbjct 909452 GTAACCGTTGGTACCGGCAATGTAGGAACCCTTGGCTCGGATGTTGTGAATGTGGAGACC 909393 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || ||||| | ||||||||| | ||||| | || |||||||||||||| || || Sbjct 909392 GATACCACCGGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGCGTCTCGTAGATACCGTC 909333 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 |||||||||| | |||| | | || || ||||| || |||| ||| | || || Sbjct 909332 GATCGAGTCGTCTCGCATGGCGACGAGGAAACACGAGGACATTTGGGGGTTGGGTGTACC 909273 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 | ||||| | || |||| || || | | | | ||||||| | |||||| Sbjct 909272 CGAGTTGAACAATGTTGGCGAGGCGTGGGTAAAGTATCGCTCGGACATGAGGTTGTAGGT 909213 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 |||| || || ||| | || |||| || | | |||| |||||| Sbjct 909212 CTCGAGGACTCG---------GTC---AATGTTGGCA---CCGTGGATACCGACGGCGAC 909168 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 ||||| ||||||| ||| ||||| ||||||| | || | | |||||||| Sbjct 909167 ACGCATAATCATGTGCTGAGGTCGTTCGACGATCTTGCCGTTGATTCTCAAGAGGTAGGA 909108 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 ||| |||||| | || || | |||||| | ||| || |||| | |||||| Sbjct 909107 CCGCTCTAGGGTCTTGAAACCGAAAAAGTTGTAGGCAAAGTCTCGGTCGTAGATGATGGC 909048 Query 2074020 GGCGTCGAGGGCCTCCTTGT 2074039 | ||||||| | ||||||| Sbjct 909047 AGAGTCGAGGACGTCCTTGT 909028 >seq4 Length=1991585 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| |||| ||||||| ||| ||| || || | | Sbjct 214142 GTACTTGGTGACGGCCTTGGTACCCTCAGAGATGGCGTGCTTGGACAGCTCTCCTGGGAG 214201 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 |||||| || || | |||||||||||| |||| Sbjct 214202 GATCAGTCGGACAGAGGTCTGGATCTCTCGGG 214233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916245549003512