Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 264 1e-65 seq1 131 2e-25 seq7 82.4 8e-11 >seq5 Length=1773785 Score = 264 bits (292), Expect = 1e-65 Identities = 524/765 (68%), Gaps = 8/765 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253 ||||| |||||| | ||||||||||||| | || | || || |||| ||||| ||| | Sbjct 909162 ATGCGTGTCGCCGTCGGTATCCACGGTGCCAACATTGAC-CGAGTCCTCGAGACCTACAA 909220 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 | | ||| | | |||||||| |||||| ||||||| |||||||| | ||||| Sbjct 909221 CCTCATGTCCGAGCGATACTTTACCCACGCCTCGCCAACATTGTTCAACTCGGGTACACC 909280 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 |||| || ||||| || ||||| || || ||| || |||||||||||||| || Sbjct 909281 CAACCCCCAAATGTCCTCGTGTTTCCTCGTCGCCATGCGAGACGACTCGATCGACGGTAT 909340 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 |||||||||||||||| || ||||| ||||||||| | |||||||||||| |||| Sbjct 909341 CTACGAGACGCTCAAGACCTGCGCCCAGATCTCCAAGACTGCCGGTGGTATCGGTCTCCA 909400 Query 53434 C-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | | | ||| |||| || || || | || || || ||||| | || | | Sbjct 909401 CATTCAC-AACATCCGAGCCAAGGGTTCCTACATTGCCGGTACCAACGGTTACTCCAACG 909459 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || ||||| | | | | || ||||||||| || ||| |||||||||| Sbjct 909460 GTATCGTTCCAATGCTAAGGGCATACGACGCCACGGCCCGATATGTCGACCAGGGTGGCA 909519 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || |||||||||||||||||||||| |||||||||||| | | || | Sbjct 909520 ACAAGCGACCTGGTGCGTTCGCCATCTACCTCGAGCCATGGCACGCCGACGTCTTCGACT 909579 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACA 53671 | ||||| || | ||| || ||| | ||||| | || || || || || ||| Sbjct 909580 TCCTCGACCTAAGAAAGAACCACGGTAAAGAAGAAGTTCGAGCACGAGATCTCTTCTAC- 909638 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || || ||||| || || || |||||| | || ||| ||| | || ||| ||| Sbjct 909639 GCCCTCTGGATCCCCGATCTGTTCATGAAGCGAGTCGAGTCGGATGGTGACTGGACCCTC 909698 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791 |||||||| ||| |||||||||||| | |||| || | | |||||| | || | Sbjct 909699 ATGTGCCCCTCCGAATGCCCCGGCCTCGCCGATGTCCACAGCGCCGAGTTTGAAAAGCTC 909758 Query 53792 TATCGGACGTACG-CAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATG 53850 || | |||| || | || | || | |||| |||| |||| || | || Sbjct 909759 TACGAGGGCTACGAGCGTGCTGGAAAGGGACGA-AAGACCATCAAAGCGCAAAAGCTCTG 909817 Query 53851 GGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTC 53910 | || || ||| || |||| ||||| || || || |||||| |||||| || | Sbjct 909818 GTTCGCCATTCTCGAGGCCCAGACCGAGACTGGTACCCCATACATGCTCTACAAAGACGC 909877 Query 53911 GGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATC 53955 | ||||| ||| |||||| | || ||||| ||||| || Sbjct 909878 CGCCAACGCCAAGTCTAACCAGCAACACCTCGGCACGATCAAGTC 909922 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 ||||||| ||| ||| ||| || |||||||| | || ||| | | || ||| | Sbjct 910677 CTCAAGGCGATCTACAAGACTGTCTGGGAGATCTCCCAAAAGGCTGTCATCGACCTCGCC 910736 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC- 55845 ||||| || ||||| | |||||||||| ||| ||| || ||| | || || || Sbjct 910737 GCTGACCGAGGTGCTTTCATCGACCAGAGTCAGAGTCTCAATATCCACCTGTCCAACCCG 910796 Query 55846 ---TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGAC 55902 ||| || ||| | | |||||||||||||||||| |||||| |||||||||||| Sbjct 910797 AGCTTCTCT---CAACTC-ACCTCGATGCACTTTTACGGCTGGAAGCGGGGACTCAAGAC 910852 Query 55903 GGGTATGTACTATCTGCGGACCCG 55926 |||||| ||||| || || || || Sbjct 910853 GGGTATCTACTACCTCCGAACGCG 910876 >seq1 Length=8012737 Score = 131 bits (144), Expect = 2e-25 Identities = 323/493 (66%), Gaps = 49/493 (10%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || ||||| |||||||| ||||| || | ||| |||||||||| || || | || || Sbjct 1039511 CCTGTTCCAATACCCTCAGCACCGTTGACCAGGATCATCGGCAGCACTGGCAGATAATAC 1039452 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | ||| ||||| || || | ||| ||||||| ||| |||| ||| Sbjct 1039451 TCTGGCTCAATTGGCATGCCGTCTTCGGTCATGTAGTTGAGCAATCCATCGTCAGCCGGG 1039392 Query 117272 TCGAATATGTT---CTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCA 117328 | ||| ||| | | || ||| || | || | ||| ||||||| |||| || || Sbjct 1039391 TGGAAGATGGTTCGCGTGATCCTTGG--CAAGTTG-GTGTAAATGTATCGAGCACTGGCC 1039335 Query 117329 GCATCCTTGCCACC---------------------------------------AGCAAGA 117349 ||||| || ||||| ||||| | Sbjct 1039334 GCATCTTTACCACCCTAGTCTAGATCAGCCTTGGTCAGAACGATTCCACTCACAGCAATA 1039275 Query 117350 CGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTT 117409 || ||||||||||| || || || |||| || | | |||||| || ||||||||| Sbjct 1039274 CGGGTACCGAATTGACCTCTGGGTTCCAGCAGCTCGATATTGTTGCTTCCGACAAAGTTT 1039215 Query 117410 TGAGCCAAGTTGACAATCGTACCTTGG-AGGCTCGCCTCACCATGGTGATACGCCGTCTG 117468 || |||| || ||||| | | | | || | |||||||| || || ||||||| Sbjct 1039214 TGCGCCAGACCAACGATCGT-CATCGTCAAACTGACTTCACCATGATGGTAGGCCGTCTT 1039156 Query 117469 CTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAG 117528 ||| | |||| | || |||| ||||| ||||| || || |||| ||| ||||| Sbjct 1039155 CTCGGACACGAAACCAGCCAATTGAGCGACCTTGATTTCCTTGGTCAAGTTACGCTTGAA 1039096 Query 117529 GCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCG 117587 ||| |||| | ||||| || |||| ||||||||||||||||||| |||||| |||| Sbjct 1039095 GCAACCATATAGAACCTTTCGTTGACCAGGCTTCAGACCATCCGCCA-TTGAGGGTATCG 1039037 Query 117588 AACGCTTGATGTC 117600 | || || |||| Sbjct 1039036 ATCGTATGTTGTC 1039024 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 74762 ATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCC 74821 ||||| || || || ||||| ||||| ||||| || || | ||||| ||||| || || Sbjct 7388645 ATGCGTTCCCTCGTCCCTGCTGATCAACTCATTGGAGAAAGTCAGGCCGGGCATGAGACC 7388704 Query 74822 ACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACA 74881 | |||||||||||| |||||||| ||||| ||| ||||||||| || ||||| || Sbjct 7388705 CCTCTTCTTCAACCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATTCCCTCGACGCA 7388764 Query 74882 CGCAAAGGCGACAAGGCGTTGCGCGAACGG 74911 || || || || || | | |||||| || Sbjct 7388765 AGCGAAAGCAACCAGTC-TCACGCGAAAGG 7388793 >seq7 Length=1004146 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||| || ||||| || | || || ||||| || || |||||||||||||| ||||| Sbjct 957060 ATCAACTCGTTCGAGAAGGTGAGTCCGGGCATGAGACCTCGCTTCTTCAACCAGAAGATC 957119 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | ||| |||||| ||||||||| || ||||| |||||||||| || || | Sbjct 957120 GAGGCGAAAGAACCAGAGAAGAAGATACCCTCGACGGCGGCAAAGGCGATCAGTCGCTCA 957179 Query 74904 GCGAA 74908 ||||| Sbjct 957180 GCGAA 957184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215945278400