Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 123 6e-23 seq7 114 3e-20 >seq1 Length=8012737 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || |||||||| || ||||||||||| |||| | ||||| ||||| Sbjct 2303478 AGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGACCATCC 2303537 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||||||||| || | ||||||||| | | ||| || ||||| || Sbjct 2303538 TCGAGTTGTTTACCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGGATACCCTCCTTGTCC 2303597 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | |||| ||| ||| || ||||| || || ||| Sbjct 2303598 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTT 2303657 Query 152073 TTGCCCGTGAG 152083 ||||||||||| Sbjct 2303658 TTGCCCGTGAG 2303668 >seq7 Length=1004146 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| || ||||||||||| |||| | |||||| || || || || ||| ||| Sbjct 973636 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCTGCCGTCCTCGAGCTGTTTGCCG 973577 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| || | ||||||||| | | || || ||||| || ||||| || ||| Sbjct 973576 GCGAAGATGAGTCGCTGCTGGTCAGGTGGTATGCCCTCCTTGTCCTGAATCTTGCTCTTG 973517 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | | |||| ||| || || || || || || || || || ||||| ||| Sbjct 973516 ACGTTGTCGATGGTGTCCGAAGATTCGACCTCGAGCGTGATCGTCTTTCCGGTGAGCGTC 973457 Query 152088 TTCACGAAGACCTGCATT 152105 || ||||||| ||||||| Sbjct 973456 TTGACGAAGATCTGCATT 973439 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| ||||| || ||||||||||| || ||||||||||| |||| || |||| Sbjct 973940 GAGTCGGAGAACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAAGGTTCG 973881 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||| || |||||||| || | |||||||| | | || || || Sbjct 973880 TCCATCCTCAAGCTGTTTACCAGCGAAGATCAGTCGTTGCTGGTCAGGGGGAATGCCCTC 973821 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || |||||| | || | | |||| ||| ||| || || || || Sbjct 973820 CTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTGTCCGAAGACTCCACCTCCAGGGT 973761 Query 152066 AATAGTTTTGCCCGT 152080 || || || || || Sbjct 973760 GATGGTCTTTCCTGT 973746 Score = 104 bits (114), Expect = 5e-17 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||||| |||||| | |||||||| ||||| || ||||||||||| ||| | ||| Sbjct 974223 CTGAGTCGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTT 974164 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | || || || || ||||| || |||||||| || | |||||||| | | ||| | Sbjct 974163 CGACCGTCCTCCAGCTGCTTT--CCAGCGAAGATGAGACGTTGCTGGTCGGGTGGGATAC 974106 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| || || || || ||||||| | || | |||| || ||| || || | Sbjct 974105 CCTCCTTGTCCTGGATCTTCGATTTGACATTGTCGATCGTGTCAGAGGACTCGACCTCCA 974046 Query 152062 GAGTAATAGTTTTGCCCGTGAGA 152084 | || || |||||||| |||||| Sbjct 974045 GCGTGATGGTTTTGCCGGTGAGA 974023 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCT 151986 |||| || | | |||||| || || || || ||| ||||||||||| || | ||||| Sbjct 973330 TGTAGTCCGAAAGAGTTCTGCCGTCCTCCAGCTGTTTACCGGCGAAGATGAGTCGCTGCT 973271 Query 151987 GGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTG 152046 |||| | | ||||| ||||| || || || || || ||| | || | |||| | Sbjct 973270 GGTCAGGTGGAATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATAGTGTCCG 973211 Query 152047 AACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||| || || | |||||| || || || || || ||||| ||||||| ||||||| Sbjct 973210 AAGACTCGACCTCCAAAGTAATCGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCATT 973152 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 151941 GTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGA 151998 |||| || ||||| || ||||| ||||||||||| | | ||||||||| | | || Sbjct 973038 GTTCGGCCGTCTTCCAGCTGCTTT--CCGGCGAAGATCAATCGCTGCTGGTCAGGAGGGA 972981 Query 151999 TTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTT 152058 | || ||||| || || || || |||||| | || | |||| ||| ||| || | Sbjct 972980 TACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATTGTGTCCGAAGACTCGACCT 972921 Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || |||||||| ||||| ||||| || |||| |||||| Sbjct 972920 CGAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 972875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820681733368