Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bullera_20alba_20[genbank_20GCA_5F001600095.1_202016-03-01] 8 sequences; 19,417,308 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7 127 1e-24 seq1 86.0 5e-12 >seq7 Length=1004146 Score = 127 bits (140), Expect = 1e-24 Identities = 172/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| ||| | || |||||||| | || |||||| ||||||||||| Sbjct 973673 TTGCATACCACCTCGCAGACGCAGAACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTA 973614 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| ||||| || |||| || ||||| || ||||| ||||| | |||||||| Sbjct 973613 GTCGGACAGAGTTCT-GC-CGTCCTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGG 973556 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | || ||||| ||| ||||| ||| | | | |||||||| | Sbjct 973555 TCAGGTGGTATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTGTCCGAA 973496 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | ||| ||||||||||| ||||| ||||| |||||||| ||||| Sbjct 973495 GATTCGACCTCGAGCGTGATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCAT 973440 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| |||||||| || ||||| ||||| | |||||||| || | || | || |||| Sbjct 973309 CGTCCTCCAGCTGTTTACCGGCGAAGATGAGTCGCTGCTGGTCAGGTGGAATTCCCTCCT 973250 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| ||||| ||||| | | || ||||| | || || ||||||| |||| Sbjct 973249 TGTCCTGGATCTTGCTCTTCACATTGTCGATAGTGTCCGAAGACTCGACCTCCAAAGTAA 973190 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||| || |||||||| |||||||| ||||| Sbjct 973189 TCGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 973153 Score = 102 bits (112), Expect = 6e-17 Identities = 119/159 (75%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| ||||||||||| ||||| |||||||| |||||||| || | ||| | ||| |||| Sbjct 973031 CGTCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGAGGGATACCCTCCT 972972 Query 44241 TTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 | ||| ||||| ||| || ||| | || ||||| | || || ||||| | || Sbjct 972971 TGTCCTGGATCTTGGACTTGACATTGT--CGATTGTGTCCGAAGACTCGACCTCGAGGGT 972914 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || ||||||||||| || ||||| ||||| Sbjct 972913 GATGGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 972875 Score = 100 bits (110), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| |||| | |||| |||||| || |||||| ||||||||||| ||| Sbjct 974229 CCACCTCTGAGTCGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 974170 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || |||| ||||||||||| || || ||||| | ||| ||||| || | || Sbjct 974169 AGGGTTCGACCGTCCTCCAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCGGGTGGG 974110 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | ||| ||||| ||| |||||| || || ||| | || ||||| | ||| || | Sbjct 974109 ATACCCTCCTTGTCCTGGATCTTCGATTTGACATTGT--CGATCGTGTCAGAGGACTCGA 974052 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAG 44316 |||||| ||| || || || || ||||| Sbjct 974051 CCTCCAGCGTGATGGTTTTGCCGGTGAG 974024 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| |||| | || ||||| || || |||||| ||||||||||| || Sbjct 973952 CATACCACCTCGGAGTCGGAGAACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 973893 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || | || | || || ||||| || || || ||||||| || ||||| || | Sbjct 973892 GGACAAGGT-TCGTCCATCCTCAAGCTGTTTACCAGCGAAGATCAGTCGTTGCTGGTCAG 973834 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGA 44283 || | || ||||| ||| |||||| ||| || ||| | |||||||| | || Sbjct 973833 GGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGT--CAATGGTGTCCGAAGA 973776 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 |||||||||| || || |||||||| || Sbjct 973775 CTCCACCTCCAGGGTGATGGTCTTTCCTGT 973746 >seq1 Length=8012737 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| || | || ||||| || || |||||| ||||||||||| || Sbjct 2303459 CATACCACCTCTCAATCGAAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 2303518 Query 44167 GG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| || | || || || || || ||||| ||||| | |||||||| || Sbjct 2303519 GGACAGAGTT--CGACCATCCTCGAGTTGTTTACCGGCGAAGATGAGTCGCTGCTGGTCA 2303576 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | ||| ||||| ||| ||||| ||| | | | |||||||| | || Sbjct 2303577 GGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGAC 2303636 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || ||||| | || || || || ||||||||| Sbjct 2303637 TCGACCTCAAGGGTGATGGTTTTGCCCGTGAGG 2303669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990364900936