Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq233 129 6e-25 >seq233 Length=223772 Score = 129 bits (142), Expect = 6e-25 Identities = 283/422 (67%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 16954 AAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGA 17013 ||| | ||| || || || ||| || | || ||||||| | ||| || || || || Sbjct 43213 AAAGAGCAGGCAGGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATGAGCTCATTGGA 43272 Query 17014 AAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCC 17073 || ||| || |||||| || | ||||| | |||||| || | || || || || Sbjct 43273 GAAGCTCAGTCCCGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAAGCAAAAGATCC 43332 Query 17074 AGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG--CG 17131 || ||||| || |||||||||| ||||| ||||| | || |||| | | | | || Sbjct 43333 GGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCGATCAGTCTCTCGGAGAAGGAAGATCG 43392 Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 ||| | | ||||| | | |||| || || |||||||| | ||||| Sbjct 43393 TCTGTCGGAG--ATCCACCTGAGTGCCCAGTCAGCCTTTTGCTTGACCACGGGAATCGTC 43450 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGT 17251 || | ||| | ||| || |||| | | || | | ||| ||||| || |||||||| Sbjct 43451 TCGACGGCATCAAACAAGAACTCTCTCTGCTCTGGTTCGCGGATATAAGTGTCGATGAGC 43510 Query 17252 AGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGG 17311 || ||| | || ||||| ||||||||||| || || || ||||||||||||| | Sbjct 43511 AGAGAGTAAGTCTCCGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAAAAGCATCTG 43570 Query 17312 GCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 || || ||| ||| || || ||||||| ||| | | || || |||||||||||| Sbjct 43571 GCCTCTGCTGCTTGCACCTCTTGCGAGAATCGCTCCACCAAGTTCTCATTCACGATGCCG 43630 Query 17372 TC 17373 || Sbjct 43631 TC 43632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517542462379800