Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq233 114 1e-20 >seq233 Length=223772 Score = 114 bits (126), Expect = 1e-20 Identities = 297/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 16181 TTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA 16240 || ||||| ||| | || || || |||||| || || |||||||||| | ||| Sbjct 43202 TTGAGGTGGGAAAAGAGCAGGCAGGCAAAGTCGGTGTGAAGACCTTCGTCTCGGGAGATG 43261 Query 16241 AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA 16300 || || ||||| || | | || ||||| || | ||||| | ||| || || | | Sbjct 43262 AGCTCATTGGAGAAGCTCAGTCCCGGCATCAGACCCCTCTTCTTGAGCCAAAAGATGGAA 43321 Query 16301 GCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCG 16360 ||||| || || || ||||| || ||||| || | ||||| ||||| | || || | | Sbjct 43322 GCAAAAGATCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCGATCAGTCTCTCGGAG 43381 Query 16361 TACGTAGCATCTTTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACA 16419 | | || ||| | | || ||||| | || |||| || || ||||| || | Sbjct 43382 AAGGAAG-ATCGTCTGTCGGAGATCCACCTGAGTGCCCAGTCAGCCTTTTGCTTGACCAC 43440 Query 16420 ATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGT 16479 ||||| || | ||| | |||||| |||| | | || ||| ||||| || Sbjct 43441 GGGAATCGTCTCGACGGCATCAAACAAGAACTCTCTCTGCTCTGGTTCGCGGATATAAGT 43500 Query 16480 ATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATA 16539 || || || | | ||| | || ||||| |||||||| || || || || || || Sbjct 43501 GTCGATGAGCAGAGAGTAAGTCTCCGAGTGAATGTTCTCCATCATGATTTGGAAACCGTA 43560 Query 16540 GAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATT 16599 ||||||| ||||| ||| ||| || || | ||||| ||| ||| ||||||||| Sbjct 43561 AAAGCATCTGGCCTCTGCTGCTTGCACCTCTTGCGAGAATCGCTCCACCAAGTTCTCATT 43620 Query 16600 CACGATACCGTCACTTGCAGCAAAAAACGC 16629 |||||| ||||| || ||||| || || Sbjct 43621 CACGATGCCGTCCGAAGCTGCAAAGAAGGC 43650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511411299550200