Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq318 167 3e-36 >seq318 Length=903324 Score = 167 bits (184), Expect = 3e-36 Identities = 598/928 (64%), Gaps = 8/928 (1%) Strand=Plus/Minus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 || || ||||||| || || ||||| ||||| | | | | || | || ||||| Sbjct 24679 GCGATGGATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATGATCTCG 24620 Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824 ||||| || ||||| | ||||||||| || | || | || || ||||| ||| | Sbjct 24619 GTGCACAGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCC 24560 Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884 |||||||| || || || || || | ||||| || || || | ||| | || || | | Sbjct 24559 GCATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTAC 24500 Query 53885 CAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATAC 53944 || | | ||||| || | ||| | || |||||| | ||| Sbjct 24499 CACAGCTTTTGCGCCTTGATGGTGCGCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTAC 24440 Query 53945 AATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 54004 | ||||||||| || || | || | | ||| ||||| || || | || |||||| Sbjct 24439 AGCGCTTCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATC 24380 Query 54005 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 54064 || |||||| |||| | | || || ||||| ||||| || || ||||| || || Sbjct 24379 AAGCTCCACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCG 24320 Query 54065 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 54124 || || || | | || |||||| ||||| |||||| || || |||||| Sbjct 24319 TAGAACAGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGGTCCAGGAAC 24260 Query 54125 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT 54184 | | ||| ||||| ||||| || || ||| |||| | | ||||||| ||||| Sbjct 24259 TCGAAAATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTG 24200 Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || || || || | ||| | || ||||| || | |||| || ||| || | || || Sbjct 24199 CCACCTTGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCG 24140 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 ||| |||||||| || | || |||||||| || | ||||| || || Sbjct 24139 TTGCTAAAGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTC 24080 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAGAT 54363 || ||||| || || || | || || | ||||| ||| || | || || ||||| Sbjct 24079 AGGCCTATACCACCGGCAGTCTTGCTAATCATGGCGCA-CGTCTTGAGAGTGTCGTAGAT 24021 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 54423 ||| || || || |||||| ||||| | || || || || | ||| | || Sbjct 24020 GCCGTCGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGG 23961 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 || || || || || | ||| || || ||||| ||||| | ||||| || | || || Sbjct 23960 CGTGCCGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTT 23901 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATT 54541 ||||||||| || | || || | | ||| | || || || || ||||| ||||| Sbjct 23900 GTACGTCTCAATCACGGAATCGACGT--CATCGCCGTGGATGCCAACGGCGACGCGCATA 23843 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGT-TGTTTATTTTCAGCAAGTAGGATTTTTC 54600 | |||||||||||| | ||| ||| | || || || |||| ||| ||| || Sbjct 23842 ATCATGTGCTGAGGACGTTCGGCGA-CGCGTCCATTGATGCGAAGCAGGTATGATCGCTC 23784 Query 54601 CAAAGTTTTAAAACCAAAATAGTTGTAT 54628 || || || || ||||| ||||| ||| Sbjct 23783 CAGCGTCTTGAAGCCAAAGTAGTTCTAT 23756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718000562800