Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq221 104 2e-17 seq233 89.7 4e-13 >seq221 Length=819827 Score = 104 bits (114), Expect = 2e-17 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 |||||| ||||| |||||||| ||||||| |||||| | ||||||||||| ||||| Sbjct 382167 AGTGGATTCCTTCTGAATGTTGTAGTCCGACAGGGTCCTTCCATCCTCCAGCTGCTTGCC 382108 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 |||| | || | ||| || || || || | || |||||||| |||||| || Sbjct 382107 CGCAAAGATCAATCTTTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTT 382048 Query 21098 CACCTGGCCGACAGTATCACCGGGCTC-CGTT-TCCACGGTAATGGTCTTGCCGGTTAAC 21155 || | | ||| ||| || || |||| || |||| || ||||||||||| || || Sbjct 382047 GACATTGTCGATAGTGTC--CGAGCTCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAAG 381990 Query 21156 GTTTTGACAAATATTTGCAT 21175 || || ||||| |||||||| Sbjct 381989 GTCTTCACAAAGATTTGCAT 381970 >seq233 Length=223772 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||| |||||| |||||||| ||||| | ||||| | |||| Sbjct 211262 AGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCT 211321 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || |||||||| ||| |||| || | ||||| || || | |||||| ||||| Sbjct 211322 TCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCT 211381 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | | ||||| | ||| |||| || || ||| Sbjct 211382 TGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTC 211441 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | ||||||||||| || ||||| Sbjct 211442 TTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422256704052260