Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq233 275 6e-69 seq221 111 2e-19 seq275 109 6e-19 >seq233 Length=223772 Score = 275 bits (304), Expect = 6e-69 Identities = 460/658 (70%), Gaps = 13/658 (2%) Strand=Plus/Minus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||| ||||| ||||| || || ||||||| || || | || || ||||||| | Sbjct 43767 TACAAGAAGGCAGAGGCATCTTTTTGGACCGCAGAAGAAATCGATCTCAGCAAGGACCTG 43708 Query 116708 AGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCC 116764 || ||||| | | |||||||| ||| | || || || |||||||| ||| Sbjct 43707 CATGATTGGGACAACAAGCTCAACGACAATGAGAGGCACTTTGTCTCTCACGTGCTCGCC 43648 Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAG 116824 || || || || ||||||||||| || ||||| |||| ||||| ||| | || ||| Sbjct 43647 TTCTTTGCAGCTTCGGACGGCATCGTGAATGAGAACTTGGTGGAGCGATTCTCGCAAGAG 43588 Query 116825 GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCAC 116884 ||||| | || ||||| | ||||| ||||| || || ||| ||||||||| | ||| Sbjct 43587 GTGCAAGCAGCAGAGGCCAGATGCTTTTACGGTTTCCAAATCATGATGGAGAACATTCAC 43528 Query 116885 TCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA---AGCTC 116941 ||||| | || || ||||||||||| || | ||| | ||| ||| || || Sbjct 43527 TCGGAGACTTACTCTCTGCTCATCGACACTTATATCCGCGAACCAGAGCAGAGAGAGTTC 43468 Query 116942 CGTTTGTTGAACGCCATCGAGACGATGCC-GTGCGTCAAAGAGAAGGCCGAGTGGGCGCT 117000 ||||| | ||| |||||||||| || ||| ||||| | ||||| || ||||| || Sbjct 43467 ---TTGTTTGATGCCGTCGAGACGATTCCCGTG-GTCAAGCAAAAGGCTGACTGGGCACT 43412 Query 117001 GCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGT 117060 | |||||| ||| |||| | ||||| |||| | ||| | ||||| || ||||| Sbjct 43411 CAGGTGGATCTCCGACAGACGATCTTCCTTCTCCGAGAGACTGATCGCCTTTGCCGCCGT 43352 Query 117061 CGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCT 117120 ||||||| ||||||| || || ||| || |||| |||||||||||||| | || || Sbjct 43351 CGAGGGCATCTTCTTCTCCGGATCTTTTGCTTCCATCTTTTGGCTCAAGAAGAGGGGTCT 43292 Query 117121 CATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGA 117180 ||||| || |||| ||| ||| |||||||||||| | ||||| ||||| || ||| Sbjct 43291 GATGCCGGGACTGAGCTTCTCCAATGAGCTCATCTCCCGAGACGAAGGTCTTCACACCGA 43232 Query 117181 CTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCG-ACCGAGCGCGGCGCGCGTCAGGG 117239 ||||||||| |||| || || | | |||| || | | | | || |||| | Sbjct 43231 CTTTGCCTGCCTGCTCTTTTCCCACCTCAAGAAGCGTGCCCATCCAGACACG-GTCAAGC 43173 Query 117240 AGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGT 117297 ||| ||||||| || |||| || || || ||||| ||||| || ||||| || Sbjct 43172 GCATCATCACCGAAGCTGTCGAGATTGAAAAGGCGTTCCTGACCGACGCACTGCCCGT 43115 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || || || || | || || || || | Sbjct 211245 ATGCAAATTTTCGTGAAGACTCTCACTGGAAAGACGATTACTTTGGAGGTGGAGAGCAGC 211186 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| ||| |||| ||||||||||||||||| | |||||| Sbjct 211185 GATACCATTGACAATGTCAAGGCAAAGATTCAAGACAAAGAGGGCATCCCACCCGACCAG 211126 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | ||||||| || ||||| || || || |||| ||||| || ||||||||| Sbjct 211125 CAAAGGCTCATCTTTGCCGGCAAGCAACTCGAAGACGGTCGCACGCTTTCTGACTACAAC 211066 Query 40870 ATCCAGAAGGA 40880 ||||||||||| Sbjct 211065 ATCCAGAAGGA 211055 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| || || || ||||| | || || || | | Sbjct 211473 ATGCAGATCTTTGTCAAAACCCTCACCGGAAAGACGATCACTTTGGAGGTAGAGAGTAGC 211414 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||||| ||| || | |||||||| ||||| || | || || Sbjct 211413 GATACCATTGACAACG-TCAAGGCAAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 211355 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | || |||||||| || || |||| |||||||| ||||||||| Sbjct 211354 GCAACGCCTCATTTTTGCTGGCAAACAACTCGAAGACGGTCGCACCCTTTCCGACTACAA 211295 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| |||||| || Sbjct 211294 CATTCAGAAGGAGAGCACGCTTCA 211271 Score = 98.7 bits (108), Expect = 1e-15 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| || ||||| | || ||||| || | |||| | | |||| |||| | Sbjct 212130 ACTGGCAAGACTATCACTCTTGAAGTCGAGTCCTCTGACACTATCGACAACG-TCAAAGC 212072 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| || ||| | ||||| ||||| ||||||| ||| ||||| Sbjct 212071 CAAGATCCAAGACAAGGAGGGTATTCCCCCTGACCAACAACGTCTCATCTTCGCAGGCAA 212012 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 ||||| || |||| |||||| | | |||||||||||||||| Sbjct 212011 GCAGCTCGAAGACGGCCGCACCTTGAGCGACTACAACATCCAG 211969 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| ||||||||| |||| ||||| | | |||| | | | |||| |||| | Sbjct 211751 ACCGGCAAGACCATCACCCTCGAAGTCGAGTCTTCTGACACCATCGACAACG-TCAAAGC 211693 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| ||||||||||| | ||||| ||||| ||||||| || || || Sbjct 211692 CAAGATTCAAGACAAGGAGGGCATCCCACCTGACCAACAACGCCTCATCTTTGCCGGTAA 211633 Query 40833 ACAGCTGGACGACG 40846 |||||| || |||| Sbjct 211632 ACAGCTCGAGGACG 211619 >seq221 Length=819827 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| |||||||| | || ||||| | | Sbjct 381970 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGCTGGAGGTCGAGAGCTCG 382029 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || || | ||||| ||||| || || | || || Sbjct 382030 GACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 382089 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| |||||||| |||||||| || | | ||||| ||||||||| Sbjct 382090 CAAAGATTGATCTTTGCGGGCAAGCAGCTGGAGGATGGAAGGACCCTGTCGGACTACAAC 382149 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 || |||||||| |||| || || || |||||||| ||| | ||||| ||| Sbjct 382150 ATTCAGAAGGAATCCACTCTCCACCTCGTGTTGCGTTTGCGTGGCGGTGGC 382200 >seq275 Length=588737 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || ||||||||| | || ||||| | | Sbjct 39197 ATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 39256 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | ||||| ||||| || || | ||||| Sbjct 39257 GACACGATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCTCCTGACCAA 39316 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| ||||| ||||| || || | | || || |||||||||| Sbjct 39317 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTGTCCGACTACAAC 39376 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| ||| || || || ||| Sbjct 39377 ATCCAGAAGGAGAGCACTCTTCACCTTGTG 39406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216076483600