Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq275 118 9e-22 seq233 113 4e-20 seq221 105 6e-18 >seq275 Length=588737 Score = 118 bits (130), Expect = 9e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||| || ||| | |||||||||||| || |||||| | Sbjct 39388 CTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTCGAGCTGCTTGCCAGCGAA 39329 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||||||||| || || || ||||| || |||||||||||| || || || || | Sbjct 39328 GATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATT 39269 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||||| ||||||||| | ||| | || || || ||||| || || || Sbjct 39268 GTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTCAGGGTCTTGAC 39209 Query 118727 AAAAATCTGCATG 118739 |||||||||||| Sbjct 39208 GAAAATCTGCATG 39196 >seq233 Length=223772 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||| || ||||||||||| ||| | ||||| || || Sbjct 211264 CACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCTTC 211323 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| ||||| ||||| | ||||| || |||||||| ||||| ||||| || |||||| Sbjct 211324 GAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCTTG 211383 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | ||| || | ||||| ||||| | || | ||| || Sbjct 211384 GATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTCTT 211443 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| ||||| |||||||| Sbjct 211444 TCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 |||||||||||||| || || ||||||| || || || || || || |||||||||||| Sbjct 211621 TCCTCGAGCTGTTTACCGGCAAAGATGAGGCGTTGTTGGTCAGGTGGGATGCCCTCCTTG 211680 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| ||| || ||| || | |||| |||||| | |||||| |||| ||| | Sbjct 211681 TCTTGAATCTTGGCTTTGACGTTGTCGATGGTGTCAGAAGACTCGACTTCGAGGGTGATG 211740 Query 118704 GTTTTGCCGGTC 118715 || ||||||||| Sbjct 211741 GTCTTGCCGGTC 211752 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118554 TGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGA 118613 || |||||||| ||||||| ||||| || |||||||| || || ||| |||||||| Sbjct 211970 TGGATGTTGTAGTCGCTCAAGGTGCGGCCGTCTTCGAGCTGCTTGCCTGCGAAGATGAGA 212029 Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673 || || || || || || || |||||||||||| || || ||| || | |||| Sbjct 212030 CGTTGTTGGTCAGGGGGAATACCCTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGATA 212089 Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||||| | | |||||| || | || | || ||||| || Sbjct 212090 GTGTCAGAGGACTCGACTTCAAGAGTGATAGTCTTGCCAGT 212130 >seq221 Length=819827 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || || | |||||| | ||||| || || || || ||||||||||| || Sbjct 382197 ACCGCCACGCAAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 382138 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || | |||||| ||||| || || || |||| | | || ||||||||||| Sbjct 382137 CAGGGTCCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGG 382078 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || || || | |||| ||||||| ||||||||| Sbjct 382077 AATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTCTCGAC 382018 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | || ||||| |||| || || ||||| || ||||| Sbjct 382017 CTCCAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 ||||| || |||||||| ||| || ||| | |||||||||||| ||||| || || Sbjct 381932 TCTTTCTGGATGTTGTAGTCGGACAAAGTTCTGCCATCCTCGAGCTGCTTTCCGGCAAAG 381873 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || |||||||| || |||||||| |||||||| |||||| Sbjct 381872 ATCAGACGCTGTTGGTCGGGAGGAATGCCCTCTTTGTCT 381834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827835655620