Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq233 122 6e-23 seq275 113 3e-20 seq221 89.7 3e-13 >seq233 Length=223772 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||| || | ||||||||| ||||| ||||||||||| || Sbjct 211019 CCACCGCGCAGACGAAGCACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGAA 211078 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| || | |||||||| || || ||||||| ||||||||| || Sbjct 211079 AGCGTGCGACCGTCTTCGAGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGGG 211138 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| |||||| ||| | || | | || | |||| | || || Sbjct 211139 ATGCCCTCTTTGTCTTGAATCTTTGCCTTGACATTGTCAATGGTATCGCTGCTCTCCACC 211198 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || || || |||||||| ||||| || || ||||| Sbjct 211199 TCCAAAGTAATCGTCTTTCCAGTGAGAGTCTTCACGAAAATTTGCAT 211245 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || || ||||| |||||||||||||| || || |||| Sbjct 211262 AGCACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCT 211321 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || ||||| || |||||||| || ||||| || || | || || ||||| Sbjct 211322 TCGAGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCT 211381 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | | | | || | |||| | || || |||| ||||| || Sbjct 211382 TGGATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTC 211441 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| ||||| |||||||||||||| Sbjct 211442 TTTCCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 >seq275 Length=588737 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | ||| || || ||||| ||||||||||||||||| | | | || Sbjct 39408 AGCACAAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCC 39349 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| ||||| || || ||||| || | | ||||||||| Sbjct 39348 TCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCT 39289 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | |||| || | || ||||| |||| |||||||| Sbjct 39288 TGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTC 39229 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || || || || |||||||| Sbjct 39228 TTACCCGTCAGGGTCTTGACGAAAATCTGCAT 39197 >seq221 Length=819827 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| |||| | || ||| ||||| | ||| ||| ||||| ||||||||||| ||| Sbjct 382196 CCGCCACGCAAACGCAACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 382137 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | || |||| ||||||||| || || || | | || || ||| || Sbjct 382136 AGGGTCCTTCCATCCTCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGA 382077 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | || | ||||| Sbjct 382076 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTCTCGACC 382017 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||| ||||| || | || ||||||||||| ||||| Sbjct 382016 TCCAGCGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070090341600