Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq318 100 6e-16 seq253 98.7 2e-15 >seq318 Length=903324 Score = 100 bits (110), Expect = 6e-16 Identities = 399/621 (64%), Gaps = 14/621 (2%) Strand=Plus/Plus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| ||||| ||||||||| ||| || || || || |||| ||| || Sbjct 23765 CTTTGGCTTCAAGACGCTGGAGCGATCATACCTGCTTCGCATCAATGGACGCGTCGCCGA 23824 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 ||| |||||||||| | ||||| || || || || || ||| |||||| | || Sbjct 23825 ACGTCCTCAGCACATGATTATGCGCGTCGCCGTTGGCATCCACGGCGATGACGTCGATTC 23884 Query 248946 CGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCT 249005 |||| | |||||||||| | ||| ||| | | || || ||| | ||||| || Sbjct 23885 CGTGATTGAGACGTACAACCTCATGTCCGAAAAGTACTTTACCCACGCCTCCCCGACCCT 23944 Query 249006 CTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAG 249064 |||||||||||| || | || || ||| || |||||||| || | |||| | | Sbjct 23945 CTTCAACGCCGGCACGCCTC-ACCCTCAACTCTCGTCGTGCTTCCTCGTCTGCATGAAGG 24003 Query 249065 ACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAAT 249121 | ||| |||||||||| || ||||| || | ||||| || | |||| || Sbjct 24004 ATGACAGCATCGACGGCATCTACGACACTCTCA---AGACGTGCGCCATGATTAGCAAGA 24060 Query 249122 TCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAG 249181 || || || || || || | || |||||| || | | || ||||| || Sbjct 24061 CTGCCGGTGGTATAGGCCTGAGCATCCACAACATTCGCGGCACCGGAAGCTACATTGCAG 24120 Query 249182 GTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCA 249241 | || ||||| | || | || ||||| ||| | || ||| ||| | ||| || Sbjct 24121 GCACCAATGGCTTTAGCAACGGCATCGTCCCCATGCTGCGAGTCTTCAACAACACTGCAC 24180 Query 249242 GGTTCATCAACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTATTTGGAAGTG 249297 | | | | |||| | ||| | | || || | || ||||| || || Sbjct 24181 GCTACGTTGACCAAG-GTGGCAACAAGAGGCCTGGCGCCTTTGCCATCTACGCCGAGCCC 24239 Query 249298 TGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATG 249357 |||||| | || || || |||||||||||| || ||||| |||| || ||| || Sbjct 24240 TGGCACTCTGACATTTTCGAGTTCCTGGACCTGCGCAAGAATCACGGAAAGGAGGAAGTG 24299 Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417 |||| || || || ||||||| |||||| || | ||| | |||||| || ||| | Sbjct 24300 CGAGCACGCGAGCTGTTCTACGCGCTGTGGATCCCAGACCTCTTCATGAAGCGTGTCGAA 24359 Query 249418 GCCGACGGCGATTGGACGCTT 249438 ||||||| |||| |||| Sbjct 24360 CAGAACGGCGAGTGGA-GCTT 24379 >seq253 Length=370571 Score = 98.7 bits (108), Expect = 2e-15 Identities = 127/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 254004 CCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTG 254063 ||||| |||| ||| ||||||| || ||||| || |||||| ||||| ||||| ||| Sbjct 148418 CCTCACATGCTCTTCTACGGTCCGCCTGGAACGGGAAAGACGAGCACCATACTGGCTCTG 148359 Query 254064 GCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGC-GCGTGCTCGAGCTGAACGCTTC 254122 ||| || || || || || | ||||| |||| | || ||||||||||||||||| Sbjct 148358 GCCAGACAGCTCTTTGGTCCGGAGTTGATGAG-GAGCAGAGTACTCGAGCTGAACGCTTC 148300 Query 254123 TGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGA 254175 |||||| | || | ||| ||| | || |||||||||| ||| | |||| Sbjct 148299 GGACGAAAGAGGCATCACCGTGGTCAGAGAGAAGATCAAGAATTTTGCAAAGA 148247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073759727548480