Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq233 120 2e-22 seq221 107 2e-18 seq275 100 2e-16 >seq233 Length=223772 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || || |||||||| ||||||||||| || |||| |||| || Sbjct 211037 ACCAAATGAAGAGTACTTTCCTTCTGGATGTTGTAGTCAGAAAGCGTGCGACCGTCTTCG 211096 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || ||||| || || | || || |||||||| || | ||||| ||||| | Sbjct 211097 AGTTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCGGGTGGGATGCCCTCTTTGTCTTGA 211156 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | || | | ||||||||||| ||||||||||| Sbjct 211157 ATCTTTGCCTTGACATTGTCAATGGTATCGCTGCTCTCCACCTCCAAAGTAATCGTCTTT 211216 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||| || |||||||| Sbjct 211217 CCAGTGAGAGTCTTCACGAAAATTTGCAT 211245 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| |||||||||||||||||||||||||||||| || |||| |||| || Sbjct 211265 ACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGACCGTCTTCG 211324 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || || || || | || || || || ||||| | || || ||||| Sbjct 211325 AGTTGTTTGCCAGCAAAAATGAGGCGTTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGG 211384 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | || | || ||| ||||||| || |||||||| Sbjct 211385 ATCTTTGCCTTGACGTTGTCAATGGTATCGCTACTCTCTACCTCCAAAGTGATCGTCTTT 211444 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || |||||||| ||||| Sbjct 211445 CCGGTGAGGGTTTTGACAAAGATCTGCAT 211473 >seq221 Length=819827 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || || | ||| || ||| |||||||||||||||||||| ||| | | || Sbjct 382181 AACACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGGGTCCTTCCATCC 382122 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| || || || || || ||||| | ||||| |||||||| | ||||||||||||| Sbjct 382121 TCCAGCTGCTTGCCCGCAAAGATCAATCTTTGTTGATCGGGAGGAATACCCTCCTTGTCC 382062 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | ||||| | ||| ||||||| || || ||| Sbjct 382061 TGGATCTTGGCCTTGACATTGTCGATAGTGTCCGAGCTCTCGACCTCCAGCGTGATGGTC 382002 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||| |||||||||||||||||||| Sbjct 382001 TTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 381970 >seq275 Length=588737 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || |||||||||||||| |||||||||||| ||| | | || || || || Sbjct 39400 GTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGAGTCCTGCCATCCTCGAGCTG 39341 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | || |||||||| ||||| | ||||||||||| || || Sbjct 39340 CTTGCCAGCGAAGATGAGACGTTGTTGGTCAGGAGGAATTCCCTCCTTGTCTTGGATCTT 39281 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | ||||| | ||| ||||||| ||| || ||||| ||||| Sbjct 39280 GGCCTTCACATTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGT 39221 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| ||||| || || || |||||| || Sbjct 39220 CAGGGTCTTGACGAAAATCTGCATGCTG 39193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395072864735185