Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq318 441 6e-119 seq233 187 2e-42 seq275 87.8 2e-12 >seq318 Length=903324 Score = 441 bits (488), Expect = 6e-119 Identities = 1233/1863 (66%), Gaps = 70/1863 (4%) Strand=Plus/Minus Query 22112 ACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTC 22171 || || ||||| |||||||| ||||| || ||||||| ||||| ||| |||||||||| Sbjct 25588 ACGGTGAACTGAATGGCGTTGGCGGCAGGCCTGGTGCGCAGATAGTACGTGCCCGTCTTG 25529 Query 22172 AGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCC 22231 || ||| ||||||| ||||||| || ||||| || | | |||| | ||||| | | | Sbjct 25528 AGTCCCTTCTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGGCGATTGC 25469 Query 22232 ATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTT 22291 | | | || || ||||| || ||| || ||||| |||||||| ||||| | Sbjct 25468 AGATGAATGTTCAAGCTTTGACTTTGGCAGATGAATGCTCCACGATCGGCAGCCATCTCG 25409 Query 22292 ATCAATGTACGCAT-CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGG 22350 || | | || | ||| || ||||| || |||||||| || | ||||| || ||| Sbjct 25408 ATGATCG-ACTTTTGCGAAATCTCCCACACCGTCTTGTAGAGCGCCTTGATC-CTGTCGG 25351 Query 22351 -TATCGATTCGATCCTCT-GGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTA 22408 ||| | || | | | ||| ||| ||| || | ||||| ||||| || Sbjct 25350 GTAT-GCCGGGAACGTTTTGGATGGAGCCGCCATGGGCAATGATGCGGTTTTTCATGCCC 25292 Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGG-TTCACCACTTGAAA 22467 || ||||||| ||| || || || | || | |||| || || ||||| || Sbjct 25291 TCATTCCACAGACCCTGCTCGACCAGCTCGCGCAGCA-ACCACGGGTTGACAACTTGGAA 25233 Query 22468 CTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATT 22527 ||| |||| || || || || ||| |||||||||||| | || || || |||| || Sbjct 25232 CTCTCCGGCCAGCACACGACGCGTGTAGATGTTGGATGTGTAGGGCTCAAAGCATTCGTT 25173 Query 22528 GTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCT 22587 | || || ||||||| ||| || ||||| ||||| || || | ||| |||||||| | Sbjct 25172 GAAGCCGAGAATCTGAGAGGTGGAGGCGGTAGGCATGGGTGCGAGCAGCAGCGAGTTGCG 25113 Query 22588 CAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGT 22647 | ||||||| ||||| || ||||| ||| | | ||| ||||||| || || || || Sbjct 25112 AAGACCGTGCTCGGAAATCTTGCTCTTCAGCGTGGTCCAATCCCACAAGTCAGAAGGTGT 25053 Query 22648 CACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCT-GCCTTCGTACG 22706 || | ||||||| ||||| |||| | | || | | ||||| ||||| ||| | Sbjct 25052 GAC---GCCCCACATGTCGTACTGCAGCTCTCC-CTTGGAGGCGGGCGAGCCTTGGTAGG 24997 Query 22707 TTTCGTACGGACCATATATCGCG----GCAAGTTCGCA-GCTCGCCTCCAACGCGCCGTA 22761 | | ||| ||||| | |||| ||||| ||||| | ||| |||| ||| ||| Sbjct 24996 TCTGGTAGGGACCGT----CGCGTTGGGCAAGCTCGCAAGAGCGC-TCCAGTGCGGCGTG 24942 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGTACG 22817 || || |||||||| |||| |||||| | | | || ||||| || | | Sbjct 24941 GTAGATGGTCTCGAAAATTTGCTTGTTGAGCTTGCGCGCTTCGGGCGAG----TCAAAGG 24886 Query 22818 GCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 ||| | | |||| ||| || || |||| ||| || || || || ||||| || |||| Sbjct 24885 CCATGCCGAGGATCATGAAAGCATCGGCCAGACCTTGCACTCCGATGCCGATGGGACGGT 24826 Query 22878 TTTTCAGATT----CGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTT 22933 | || |||| | | ||||| | ||||| | || ||||| | Sbjct 24825 GACGGAAGTTGGAACGACGCGCCT-CCTCG---ACGGGATAGTAGTTGACGTCGATGATG 24770 Query 22934 CTGTTCAAGTTTCT---GGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAA 22990 | ||||| ||| | | | || ||| || | | ||||| ||| Sbjct 24769 CGGTTCAGGTTGCCACAGATGACC-TTTGCG--ACGGCGTGAAGTTTCTTAAAGTTGTAC 24713 Query 22991 -AC---GCCCGATTGTACAACAAACTTGTTGAC--GGCGATCGAGGCAAGATTGCATACG 23044 || | | | ||| | | ||| | || | |||||| || || | ||||| ||| Sbjct 24712 GACTTGGTCGAAGTGT-CGATGAAC--GATGGCAGGGCGATGGATGCCAAGTTGCAGACG 24656 Query 23045 GCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATC 23104 || ||||||||| | | |||||| | || ||||| || || || || | ||| || Sbjct 24655 GCAACCTCGTCTGGCGCAGAGTACTCGATGATCTCGGTGCACAGGTTACTGCTCTTGATG 24596 Query 23105 GTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGC 23164 ||||||| || |||||||||| || || || || ||||||||| ||||| | || Sbjct 24595 GTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCCTTGTACAGCATAAAGGGG 24536 Query 23165 GTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGT 23224 |||| ||||||| |||| || | ||| || ||||| | || || | | Sbjct 24535 TTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTACCACAGCTTTTGCGCCTTGATGGTG 24476 Query 23225 CGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAA 23284 ||| | | || || | |||||||||| ||||| ||| ||||| || | || || Sbjct 24475 CGCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTACAGCGCTTCAAACTCCTCGCCATAG 24416 Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA 23344 ||||||| ||| || | | | || ||||| | |||||| || | ||| Sbjct 24415 ACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTCCACTCGCCGTTCTGTTCG 24356 Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 || || |||| || || || || ||||| || ||||||||||| ||||| || ||||| Sbjct 24355 ACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAACAGCTCGCGTGCTCGCACT 24296 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 ||||| || ||| ||||| || |||| || || || | ||| | ||||| ||| Sbjct 24295 TCCTCCTTTCCGTGATTCTTGCGCAGGTCCAGGAACTCGAAAATGTCAGAGTGCCAGGGC 24236 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCC 23524 ||| ||| | |||||| ||||| || ||||| ||||| || || || ||||| || || Sbjct 24235 TCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCTTGGTCAACGTAGCGTGCA 24176 Query 23525 GTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC 23584 ||||||||| | |||| ||||| || |||| |||||| ||| ||| || Sbjct 24175 GTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCGTTGCTAAAGCCATTGGTGCCTGCA 24116 Query 23585 ACACTCGAACCTT----TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 | | | ||| | | |||| |||||| | | | ||||| || ||| | | Sbjct 24115 A----TGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTCAGGCCTATACCACCGGCAGT 24060 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || ||||| ||||| || ||||||||||||||||| ||||||||||| || || Sbjct 24059 CTTGCTAATCATGGCGCACGTCTTGAGAGTGTCGTAGATGCCGTCGATGCTGTCATCCTT 24000 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | ||| | ||| ||||| || | ||| | | ||||| |||| ||| || || Sbjct 23999 CATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGCCGGCGTTGAAGAGGGT 23940 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTC-GACATTAGATTGTACGTGTCGATGGCGGCAT 23819 |||| |||||| |||||||| | ||| ||||| || |||||||| || || ||| || Sbjct 23939 CGGGGAGGCGTGGGTAAAGTA-CTTTTCGGACATGAGGTTGTACGTCTCAATCACGGAAT 23881 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGA 23879 | | ||| || ||||| || || | |||||||||||| ||||||| ||||| | ||| Sbjct 23880 CGACGTCATCGCCGTGGATGCCAACGGCGACGCGCATAATCATGTGCTGAGGACGTTCG- 23822 Query 23880 CCGTGACG---CCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAAT 23936 | |||| || || || | ||| ||||| || | || ||| || || ||||| | Sbjct 23821 --GCGACGCGTCCATTGATGCGAAGCAGGTATGATCGCTCCAGCGTCTTGAAGCCAAAGT 23764 Query 23937 AGT 23939 ||| Sbjct 23763 AGT 23761 >seq233 Length=223772 Score = 187 bits (206), Expect = 2e-42 Identities = 378/555 (68%), Gaps = 17/555 (3%) Strand=Plus/Minus Query 57582 TACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTG 57641 ||||| |||||||| ||||| |||||||||| |||||| | || || ||||| ||| Sbjct 43767 TACAAGAAGGCAGAGGCATCTTTTTGGACCGCAGAAGAAATCGATCTCAGCAAGGACCTG 43708 Query 57642 AGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCG 57698 |||||||| | ||||| || |||||| | ||| | |||||| | || Sbjct 43707 CATGATTGGGACAACAAGCTCAACGACAATGAGAGGCACTTTGTCTCTCACGTGCTCGCC 43648 Query 57699 TTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAA 57758 || || || || || || || || || || ||||| ||||| || |||| || ||||| Sbjct 43647 TTCTTTGCAGCTTCGGACGGCATCGTGAATGAGAACTTGGTGGAGCGATTCTCGCAAGAG 43588 Query 57759 GTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCAT 57818 ||||||| | ||||| |||||||||||||| || ||| | || || ||| | || Sbjct 43587 GTGCAAGCAGCAGAGGCCAGATGCTTTTACGGTTTCCAAATCATGATGGAGAACATTCAC 43528 Query 57819 TCAGAAATGTATTCGCTACTCATCGATACGTA----CGTGAAGGACAACGACGAGAAACG 57874 || || | || || || |||||||| || || || ||| | | | |||| | Sbjct 43527 TCGGAGACTTACTCTCTGCTCATCGACACTTATATCCGCGAACCAGAGCAGAGAGA---G 43471 Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934 | |||| | || |||| || || |||| | || | ||||| || ||| || | Sbjct 43470 T-TCTTGTTTGATGCCGTCGAGACGATTCCCGTGGTCAAGCAAAAGGCTGACTGGGCACT 43412 Query 57935 CAAATGGATAAAAAGCGCC--ACG-GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGC 57991 || ||||| || | ||| | | ||| ||||||| || ||||| || ||||| Sbjct 43411 CAGGTGGAT---CTCCGACAGACGATCTTCCTTCTCCGAGAGACTGATCGCCTTTGCCGC 43355 Query 57992 CGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGG 58051 |||||| || || ||||| || || ||||| | || |||||| | ||||| | || Sbjct 43354 CGTCGAGGGCATCTTCTTCTCCGGATCTTTTGCTTCCATCTTTTGGCTCAAGAAGAGGGG 43295 Query 58052 CCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATAC 58111 |||||||| || |||| || ||| ||| | || || || ||||| ||||| || || Sbjct 43294 TCTGATGCCGGGACTGAGCTTCTCCAATGAGCTCATCTCCCGAGACGAAGGTCTTCACAC 43235 Query 58112 TGATTTTGCGTGCCT 58126 || ||||| ||||| Sbjct 43234 CGACTTTGCCTGCCT 43220 >seq275 Length=588737 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| ||||| || || || |||||| | || || || | || Sbjct 39196 CATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTC 39255 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | || |||||||| || | || || ||||| Sbjct 39256 GGACACGATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCTCCTGACCA 39315 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || ||||||||||| ||| | || || | |||| || ||| || || Sbjct 39316 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCAGGACTCTGTCCGACTACAA 39375 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || |||||||| || || || Sbjct 39376 CATCCAGAAGGAGAGCACTCTTCACCTTGTGCT 39408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763697541200