Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq318 109 1e-18 seq233 107 4e-18 >seq318 Length=903324 Score = 109 bits (120), Expect = 1e-18 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || || ||||||||| || || || | ||| ||||| || || || || || ||| Sbjct 24070 CCACCGGCAGTCTTGCTAATCATGGCGCACGTCTTGAGAGTGTCGTAGATGCCGTCGATG 24011 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGTTCCACA 94910 || ||||| | | || | ||||||||||| || ||||| ||||| | | || || Sbjct 24010 CTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGC-GTGCCGGC 23952 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 || || || || ||||| || |||||||| || | |||||||| | || || || Sbjct 23951 GTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACGTCTC 23892 Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030 ||| || || | || ||| ||||| ||||| || || || ||||||||||||| ||| Sbjct 23891 AATCACGGAATCGACGTCATCGCCGTGGATGCCAACGGCGACGCGCATAATCATGTGCTG 23832 Query 95031 AGGGCGCTC 95039 ||| || || Sbjct 23831 AGGACGTTC 23823 >seq233 Length=223772 Score = 107 bits (118), Expect = 4e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||| || || || || |||||||| || | || || ||||| || ||| || Sbjct 43365 GCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGATCTTTTGCTTCCATCTTTTGGCTC 43306 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| |||||| | |||| || || | || |||||||||| |||| || | |||||| Sbjct 43305 AAGAAGAGGGGTCTGATGCCGGGACTGAGCTTCTCCAATGAGCTCATCTCCCGAGACGAA 43246 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 |||||||| ||||||||| ||| |||| || Sbjct 43245 GGTCTTCACACCGACTTTGCCTGCCTGCTCTT 43214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989577850663175