Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq318 179 5e-40 >seq318 Length=903324 Score = 179 bits (198), Expect = 5e-40 Identities = 557/855 (65%), Gaps = 8/855 (1%) Strand=Plus/Minus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 ||||||| || || ||||| ||||| | | | | || | || ||||| ||||| Sbjct 24673 GATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATGATCTCGGTGCAC 24614 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 || ||||| | |||||| || || | || | || || ||||| ||| ||||||| Sbjct 24613 AGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCC 24554 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 || || || || || || | ||||| || || || | ||| | || || | ||| | Sbjct 24553 TTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTACCACAGC 24494 Query 63129 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGT 63188 | | ||||| || | ||| | | || |||||| |||| | Sbjct 24493 TTTTGCGCCTTGATGGTGCGCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTACAGCGCT 24434 Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 || ||||| || || | || | | ||| | ||| || || | || |||||||| | Sbjct 24433 TCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTC 24374 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 ||||| |||| | | || || ||||| ||||| || || ||||| || || || Sbjct 24373 CACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAAC 24314 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 || || | || || |||||| ||||| |||||| || || |||||| | | | Sbjct 24313 AGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGGTCCAGGAACTCGAAA 24254 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 || ||||| ||||| || || ||| ||||| | | ||||||| ||||| || || Sbjct 24253 ATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCT 24194 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 || || | ||| | || ||||| || | |||| || ||| || | || ||||| | | Sbjct 24193 TGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCGTT-GCT 24135 Query 63489 ATA-CCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 | | |||||||| || | || |||| ||| || | ||||| || || || || Sbjct 24134 AAAGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTCAGGCC 24075 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTGTCATAGATGCCTT 63606 ||| || || || | || || | ||||| ||| || | ||||| |||||||| | Sbjct 24074 TATACCACCGGCAGTCTTGCTAATCATGGCGCA-CGTCTTGAGAGTGTCGTAGATGCCGT 24016 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666 | ||||| ||||| ||||| | || || || || | ||| | ||| || | Sbjct 24015 CGATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGC 23956 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | || || || | ||| || || ||||| ||||| | ||||| || | || ||||||| Sbjct 23955 CGGCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACG 23896 Query 63727 TCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACAT 63784 ||||||| | || || | | ||| | || || || || ||||| ||||| | ||| Sbjct 23895 TCTCAATCACGGAATCGACGT--CATCGCCGTGGATGCCAACGGCGACGCGCATAATCAT 23838 Query 63785 GTGCTGAGGTCTTTC 63799 ||||||||| | ||| Sbjct 23837 GTGCTGAGGACGTTC 23823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813781730800