Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceraceosorus_20bombacis_20[genbank_20GCA_5F900000165.1_202015-10-18] 485 sequences; 26,090,089 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq318 158 2e-33 >seq318 Length=903324 Score = 158 bits (174), Expect = 2e-33 Identities = 550/854 (64%), Gaps = 6/854 (1%) Strand=Plus/Minus Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 ||||||| || || ||||| ||||| | | | | || | || ||||| ||||| Sbjct 24673 GATGCCAAGTTGCAGACGGCAACCTCGTCTGGCGCAGAGTACTCGATGATCTCGGTGCAC 24614 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 || ||||| | ||||||||| || | || | || || ||||| ||| ||||||| Sbjct 24613 AGGTTACTGCTCTTGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTCGCCGCATCC 24554 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921 || || || || || || | ||||| || || || | ||| | || || | ||| | Sbjct 24553 TTGTACAGCATAAAGGGGTTGCCAGTCTCGATTTGCGCTTCCAAGATGGCGTACCACAGC 24494 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGT 65981 | | ||||| || | ||| | || |||||| | |||| | Sbjct 24493 TTTTGCGCCTTGATGGTGCGCTTGGCGCGACCCTCCGCTTCGTACTTTTCGTACAGCGCT 24434 Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || ||||| || || | || | | ||| ||||| || || | || |||||||| | Sbjct 24433 TCAAACTCCTCGCCATAGACTTCGGCCATGCCAGGGCACTCGTTGGGGCACATCAAGCTC 24374 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 ||||| |||| | | || || ||||| ||||| || || ||||| || || || Sbjct 24373 CACTCGCCGTTCTGTTCGACACGCTTCATGAAGAGGTCTGGGATCCACAGCGCGTAGAAC 24314 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 | || | | || |||||| ||||| |||||| || || |||||| | | | Sbjct 24313 AGCTCGCGTGCTCGCACTTCCTCCTTTCCGTGATTCTTGCGCAGGTCCAGGAACTCGAAA 24254 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 || ||| | ||||| || || ||| ||||| | | ||||||| ||||| || || Sbjct 24253 ATGTCAGAGTGCCAGGGCTCGGCGTAGATGGCAAAGGCGCCAGGCCTCTTGTTGCCACCT 24194 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 || || | ||| | || ||||| || | |||| || ||| || | || || ||| Sbjct 24193 TGGTCAACGTAGCGTGCAGTGTTGTTGAAGACTCGCAGCATGGGGACGATGCCGTTGCTA 24134 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCT 66341 |||||||| || | || |||||||| | | ||||| || || || ||| Sbjct 24133 AAGCCATTGGTGCCTGCAATGTAGCTTCCGGTGCCGCGAATGTTGTGGATGCTCAGGCCT 24074 Query 66342 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAGATGCCCTC 66400 || || || || | || || | ||||| ||| || | || || |||||||| || Sbjct 24073 ATACCACCGGCAGTCTTGCTAATCATGGCGCA-CGTCTTGAGAGTGTCGTAGATGCCGTC 24015 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 || || |||||| ||||| | || || || || | ||| | || || || Sbjct 24014 GATGCTGTCATCCTTCATGCAGACGAGGAAGCACGACGAGAGTTGAGGGTGAGGCGTGCC 23955 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 || || || | ||| || || ||||| ||||| | ||||| || | || |||||||| Sbjct 23954 GGCGTTGAAGAGGGTCGGGGAGGCGTGGGTAAAGTACTTTTCGGACATGAGGTTGTACGT 23895 Query 66521 CTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTAACATG 66578 |||||| | || || | | ||| | || || || || ||||| ||||| | |||| Sbjct 23894 CTCAATCACGGAATCGACGT--CATCGCCGTGGATGCCAACGGCGACGCGCATAATCATG 23837 Query 66579 TGCTGAGGTCTTTC 66592 |||||||| | ||| Sbjct 23836 TGCTGAGGACGTTC 23823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168809827400